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#1791 MP decreased protein localization to telomeric heterochromatin

open
nobody
None
2
2014-12-09
2014-09-30
Valerie Wood
No

should be a child of decreased localization to telomeric region

v

Discussion

  • Midori Harris

    Midori Harris - 2014-10-16

    It looks like the reasoner is correctly inferring

    FYPO:0002387 decreased protein localization to telomeric heterochromatin is_a FYPO:0003803 decreased protein localization to telomere

    at least in the obo file that I think is getting used for Canto, chado, etc.

     

  • Midori Harris

    Midori Harris - 2014-10-16
    • Description has changed:

    Diff:

    --- old
+++ new
@@ -1,4 +1,3 @@
-

 should be a child of decreased localization to telomeric region
    • status: open --> closed-works-for-me
     

  • Valerie Wood

    Valerie Wood - 2014-10-17

    I'm not sure that is correct. The telomeric heterochromatin (a.k.a subtelomeric heterochromatin) is adjacent to the "telomere proper"
    See: https://sourceforge.net/p/geneontology/ontology-requests/11254/

    I raised a SF ticket for GO. If you use SO in the x-products it should be defined in relation to to subtelomere not telomere.

    Let me know if this doesn't make sense, will reopen with low priority.

    v

     

  • Valerie Wood

    Valerie Wood - 2014-10-17
    • Description has changed:

    Diff:

    --- old
+++ new
@@ -1,4 +1,3 @@
-
 should be a child of decreased localization to telomeric region

 v
    • status: closed-works-for-me --> open
    • Priority: 5 --> 2
     

  • Midori Harris

    Midori Harris - 2014-10-17

    The FYPO term is inheriting its ancestry by reasoning based on the ancestry of the xp'd GO terms. If I don't mess with it, it will follow any corrections GO makes to its structure. At present, GO has "telomere" as an exact synonym for "telomeric region", and until/unless they change that, there's nothing for me to do in FYPO.

     

  • Midori Harris

    Midori Harris - 2014-12-09

    note to self: also affects FYPO:0003752 and FYPO:0004137