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#806 question about has_output /output_of
abnormal microtubule cytoskeleton organization during vegetative growth
has term suggestion
abnormal microtubule cytoskeleton during vegetative growth
'abnormal microtubule cytoskeleton during vegetative growth' is output_of 'abnormal microtubule cytoskeleton organization during vegetative growth'.
Here:
http://curation.pombase.org/pombase-trac/wiki/RelationsAndTransitivity
we say
output_of
Propagation: Annotations should propagate over output_of in the direction output A implies input B (A output_of B: all genes annotated to A should have annotation to B inferred).
Meaning: Phenotype A results from phenotype B. A mutation that causes phenotype A must also cause phenotype B.
Search results: A query for B should retrieve both genes annotated directly to B and genes annotated to A. Genes annotated to A can therefore be found by searching directly for A or by searching for B. A query for A will not necessarily retrieve all genes annotated to B.
Canto: TBD (under discussion)
Therefore
(A output_of B: all genes annotated to A should have annotation to B inferred)
'A abnormal microtubule cytoskeleton during vegetative growth' is output_of 'B abnormal microtubule cytoskeleton organization during vegetative growth'.
Canto is listed as under discussion. I don't think it was ever discussed? but the link is in place. It seems that we want to remove this link too?
Yep. I'm still trying to understand though....I'll have a good think about it now before my head gets filled by the day.....most of my inbox seems to be related to this question right now....
maybe no action required, still on my list
has_part is currently ignored
https://sourceforge.net/p/pombase/curation-tool/770/