PomBase / Curation tasks / #652 Sequence updates

#652 Sequence updates

Status: open

Owner: nobody

Labels: None

Priority: 9

Updated: 2015-06-03

Created: 2009-02-18

Creator: Valerie Wood

Private: No

1. Add new telomeric region to contigs
(are there 2 now?)

2. Do fixes small which are confirmed
http://www.sanger.ac.uk/Projects/S_pombe/sequence_updates.shtml
http://www.sanger.ac.uk/Projects/S_pombe/sequence_discrepancies.shtml

3. Can we add anything from Broad data? Speak to Nick Rhind

To Do
Give advance notice of contig changes
Make Fixes
Update Stats/ webpage (sequencing status etc)/ download data
EMBL resubmission

Discussion

Valerie Wood - 2009-02-18

To Do 2
mail pombelist

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Valerie Wood - 2009-02-27

Need to do updates then send revised sequence ends to Nick Rhind and Chad Nusbaum

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Valerie Wood - 2009-02-27

priority: 5 --> 9
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Valerie Wood - 2009-04-18

SPAPB17E12.06 annotated as pseudogene frameshifted
SPBC16E9.16c add to list of seqeucne errors and check whether confirmed by
broad
SPAC29E6.04 possible sequence error represented as short intron

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Valerie Wood - 2009-04-21

The gap-filling sequence on the left arm of chromosome 2 in fission yeast Schizosaccharomyces pombe
Yeast
Volume 25, Issue 9, Date: September 2008, Pages: 673-679
Mayumi Sasaki, Alimjan Idiris, Aya Tada, Hiromichi Kumagai, Yuko Giga-Hama, Hideki Tohda

was there another gap filling sequence?

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Valerie Wood - 2009-12-12

Include
i) all frameshifts/ sequence errors recorded
ii) versioning
27D7 repeat

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Valerie Wood - 2015-06-03

Ticket moved from /p/pombase/sequence-analysis/1/

Can't be converted:

_milestone:
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