#59 extracellular SP-SL mapping

[Valerie Wood]

https://sourceforge.net/tracker/?func=detail&atid=605890&aid=2506531&group_id=36855

Message:
Dropbox/pombase/pombe_secreted_proteins_MAH_notes.xlsx

[Valerie Wood]

I can't remember what needs to happen with this!

[Midori Harris]

I had a poke round and got it back in my head, sort of

It's a follow-up to the linked GO annotation tracker item -- Uniprot maps their SP-SL term "secreted" to GO "extracellular region", never mind how many fungal and bacterial proteins are secreted into the periplasmic space or cell wall.

In the spreadsheet (now at Dropbox/pombase/ontologies/GO/GO_annotation_misc/pombe_secreted_proteins_MAH_notes.xlsx) I looked at the pombe genes that have the SP-SL "secreted" keyword. I think the idea was that you would use that info to decide whether to have UniProt remove the keyword from their entry, or to keep filtering that SP-SL:GO mapping for our annotations.

I'm fairly sure that if we do nothing at this point, we avoid some dodgy annotations to extracellular, and at worst miss a handful of good ones.

[Valerie Wood]

OK, I'll take a look at some point. Nice thing about these is the longer you leave 'em, the less there is to do.

Val