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#456 logs; syntax check required

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nobody
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5
2015-03-15
2015-03-12
No

phosphorylated residue S47 annotation_extension=added_during(GO:0000089)
is appearing in the modification section of csm1 gene page

(need to check that all annotation statements are terminated by ';'

Discussion

  • Valerie Wood

    Valerie Wood - 2015-03-12

    i.e in the curation session it looked like this (no comma)
    residue=S47 annotation_extension=added_during(GO:0000089)

    but I don't think this is appearing in the logs

     
  • Kim Rutherford

    Kim Rutherford - 2015-03-15

    I think this will be fixed when I fix:
    https://sourceforge.net/p/pombase/chado/434/

    Currently it assumes you want "S47 annotation_extension=added_during(GO:0000089)" to be stored as the residue because it does no syntax checking of the residue string. When #434 is done that will be a warning.

     

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