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#237 Fix warnings about SO types in Chado load

eventually
open
Kim Rutherford
logs (30)
4
2014-06-09
2013-09-24
Kim Rutherford
No

What's causing these?:

5'UTR SPAC8E11.03c.1:5'UTR:1 from gene: SPAC8E11.03c: no SO type for mRNA - skipping
CDS SPBP22H7.09c.1 from gene: SPBP22H7.09c: no SO type for mRNA - skipping
CDS SPBP22H7.09c.1 from gene: SPBP22H7.09c: no SO type for mRNA - skipping
mRNA SPMTR.04.1: no SO type for source - skipping
mRNA SPMIT.11.1: no SO type for source - skipping

Discussion

  • Valerie Wood

    Valerie Wood - 2014-06-09
    • labels: --> logs
    • summary: Fix warnings about SO types in Chado load --> logs: Fix warnings about SO types in Chado load
     

  • Valerie Wood

    Valerie Wood - 2014-06-09
    • Priority: 6 --> 5
     

  • Valerie Wood

    Valerie Wood - 2014-06-09
    • summary: logs: Fix warnings about SO types in Chado load --> Fix warnings about SO types in Chado load
    • Group: next-load --> eventually
    • Priority: 5 --> 4
     

  • Valerie Wood

    Valerie Wood - 2014-06-09

    we need to look at this ticket when we start to curate alternative transcripts etc.

     

  • Kim Rutherford

    Kim Rutherford - 2014-06-09

    no SO type for source - skipping

    Should be fixed in the next load.

     

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