It would be beneficial to have a written guide on how information used in predictive microbial models, food process models, dose response models or QMRA models in general can be translated into a well formatted SBML file.
Some additional thoughts:
The following SBML 3 packages could should be considered:
core 3: general model structure and implementation of primary and global models
Annotation: annotation of models
Hierarchical Model Composition: secondary and tertiary models, (complex QMRA models)
Distributions: providing errors on fitted model parameters
(Groups: models on strain / micro-organism "cocktails")
Additionally the guide should also describe
- how to describe experimental data used for model generation (e.g. using NuML)
- how to describe simulation results in case of QMRA models (e.g. using SEDML)
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Some additional thoughts:
The following SBML 3 packages could should be considered:
core 3: general model structure and implementation of primary and global models
Annotation: annotation of models
Hierarchical Model Composition: secondary and tertiary models, (complex QMRA models)
Distributions: providing errors on fitted model parameters
(Groups: models on strain / micro-organism "cocktails")
Additionally the guide should also describe
- how to describe experimental data used for model generation (e.g. using NuML)
- how to describe simulation results in case of QMRA models (e.g. using SEDML)