Re: [Pipeline130-developers] DRMAA

[Nils H. <nil...@uc...>]

Ok, I figured it out.

We need to set the "Native Specification" to:
            
jt.setNativeSpecification("-b n");

Reference:
http://markmail.org/message/x7cubdcw4nduv75y#query:+page:1+mid:xzavt7onfvdne
rz2+state:results

We can now begin to implement the DRMAA interface.  I will start coding this
tonight,

Nils


On 5/13/09 7:24 PM, "Chris Swan" <cs...@uc...> wrote:

> I really am stumped by this. I can submit a job manually with:
> qsub /export/home/cs130/cswan/pipeline130/trunk/sandbox/drmaa/helloworld.sh
> and check its status with
> qstat -j <number>
> 
> The job runs perfectly (I made it so it touches the file "testfile" in the
> source directory). Then, using DRMAA, I submit an identical job. Running
> qstat -j on this job gives me identical information to the qsub version, but
> the script does not get executed.
> 
> No idea what's going on. Probably won't be able to look at it any more
> tonight though.
> 
> -Chris
> 
> --------------------------------------------------
> From: "Nils Homer" <nil...@uc...>
> Sent: Wednesday, May 13, 2009 5:56 PM
> To: <pip...@li...>
> Subject: [Pipeline130-developers] DRMAA
> 
>> Just to let everyone know, I am still testing out the DRMAA interface via
>> the drmaa example in the sandbox folder (note: there are hard-coded
>> links).
>> Anyhow, if someone figures out how to get a job to successfully run (mine
>> are always aborted after submission), let me know.
>> 
>> Nis
>> 
>> 
>> 
>> 
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> 
> ------------------------------------------------------------------------------
> The NEW KODAK i700 Series Scanners deliver under ANY circumstances! Your
> production scanning environment may not be a perfect world - but thanks to
> Kodak, there's a perfect scanner to get the job done! With the NEW KODAK i700
> Series Scanner you'll get full speed at 300 dpi even with all image
> processing features enabled. http://p.sf.net/sfu/kodak-com
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