The database/table export facility has an option to export binary data as ascii text: "Use hexadecimal for BLOB
Export type".
A similar feature is needed for geometry columns.
MySQL can convert them to WKT/WKB format using AsText() and AsBinary().
MySQL can convert the data back using GeomFromText() and GeomFromWKB().
De-assigning myself since I didn't find a straightforward way of implementing this.
Data exporting uses unbuffered mode which makes it impossible to send additional queries to convert data to WKT/WKB. On the other hand modifying the original query to convert data to WKT/WKB can not be done reliably for all cases. Moreover, such query modification complicates the logic and I do not believe it is worth the benefits.
Won't fix due to technical difficulties.