You enter a name in the "Bookmark this SQL query:" input, but after returning it ist not in the dropdown nor in pma__bookmark
Sorry, wrong Milestone, should be Latest_Git
I am unable to reproduce the problem with latest git. It could possibly be resolved meanwhile. Can you update your git tree and try again? Btw, are you able to reproduce the bug on our demo server (http://demo.phpmyadmin.net/master-config) ?
I missed the "from SQL tab" part. I can reproduce the bug.
Fixed with https://github.com/phpmyadmin/phpmyadmin/commit/4859fcc5bc4b909c178737db9fb799ebaeccee7b