(I open a ticket, as suggested by Isaac in https://sourceforge.net/p/phpmyadmin/discussion/Help/thread/1bb7a3c4/ )
The create_tables.sql script for creating internal phpmyadmin tables forces ENGINE=MyISAM . I think that this shouldn't be forced, and assume the default engine (InnoDB), if no MyISAM specific features are needed.
Ticket moved from /p/phpmyadmin/feature-requests/1440/
Fixed with https://github.com/phpmyadmin/phpmyadmin/commit/3cede7cbac68c8b3c1831cd4bd970b13a9964d37
how to fix these errors in phpmyadmin4.0.4
$cfg['Servers'][$i]['pmadb'] ... not OK [ Documentation ]
$cfg['Servers'][$i]['relation'] ... not OK [ Documentation ]
General relation features: Disabled
$cfg['Servers'][$i]['table_info'] ... not OK [ Documentation ]
Display Features: Disabled
$cfg['Servers'][$i]['table_coords'] ... not OK [ Documentation ]
$cfg['Servers'][$i]['pdf_pages'] ... not OK [ Documentation ]
Creation of PDFs: Disabled
$cfg['Servers'][$i]['column_info'] ... not OK [ Documentation ]
Displaying Column Comments: Disabled
Browser transformation: Disabled
$cfg['Servers'][$i]['bookmarktable'] ... not OK [ Documentation ]
Bookmarked SQL query: Disabled
$cfg['Servers'][$i]['history'] ... not OK [ Documentation ]
SQL history: Disabled
$cfg['Servers'][$i]['designer_coords'] ... not OK [ Documentation ]
Designer: Disabled
$cfg['Servers'][$i]['recent'] ... not OK [ Documentation ]
Persistent recently used tables: Disabled
$cfg['Servers'][$i]['table_uiprefs'] ... not OK [ Documentation ]
Persistent tables' UI preferences: Disabled
$cfg['Servers'][$i]['tracking'] ... not OK [ Documentation ]
Tracking: Disabled
$cfg['Servers'][$i]['userconfig'] ... not OK [ Documentation ]
User preferences: Disabled