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File Date Author Commit
 .settings 2010-05-23 Jim Balhoff Jim Balhoff [914b20] Change to Eclipse project warning settings
 build-lib 2008-10-06 Jim Balhoff Jim Balhoff [cda62a] Phenex project should be ready to use now.
 launchers 2008-10-28 Jim Balhoff Jim Balhoff [7aa632] Undo/redo support with model objects supporting...
 lib 2012-02-28 Jim Balhoff Jim Balhoff [2bab98] Phenotype proposals model and beginning of view.
 logging-dev 2010-06-22 Jim Balhoff Jim Balhoff [c352ff] Cleaned up logging. Restricted release version ...
 src 2012-03-01 Jim Balhoff Jim Balhoff [ae6c48] Documentation for proposals loader.
 test 2010-04-30 Jim Balhoff Jim Balhoff [b7a200] Removed data loader test.
 testfiles 2010-02-23 Jim Balhoff Jim Balhoff [89c950] Fixed NeXML reader to look for latest phenotype...
 .classpath 2012-02-28 Jim Balhoff Jim Balhoff [2bab98] Phenotype proposals model and beginning of view.
 .gitignore 2012-01-26 Jim Balhoff Jim Balhoff [e0dd71] Enabled autosave menu to stay up-to-date with c...
 .project 2008-12-02 Jim Balhoff Jim Balhoff [fce978] Fixing classpaths.
 LICENSE 2010-02-11 Jim Balhoff Jim Balhoff [ee676b] Fixed major bug in file saving. Phenotype eleme...
 README 2010-04-11 Jim Balhoff Jim Balhoff [3d9263] Added README
 build.xml 2012-01-30 Jim Balhoff Jim Balhoff [bfec16] Updated version.
 log4j.xml 2010-06-22 Jim Balhoff Jim Balhoff [c352ff] Cleaned up logging. Restricted release version ...

Read Me

Phenex is an application for annotating character matrix files with ontology terms. Character states can be annotated using the Entity-Quality syntax for ontologically describing phenotypes. In addition, taxon entries can be annotated with identifiers from a taxonomy ontology. Phenex saves ontology annotations alongside traditional character matrix data using the new NeXML format standard for evolutionary data. Phenex builds on Phenote and OBO-Edit from the OBO project.

Phenex has been initially developed as part of the Phenoscape project.