Hello!
I am trying to use phageterm, but only output i got were .pdf report and .csv statistics. No fasta file.
There were no errors. I used 2 paired fastq.gz files and valid contig for -r.
Please tell me more about the results. What type of phage have you got in the PDF report? I ask because a fasta file is not generated for all types of phage. (If your phage is type T4 with no precise termini, we cant generate a fasta file reorganized to start at the termini because there is no termini). So the absence of a fasta file is not necessarily a bug. But I need more info to know if its a bug here or not. Thank you :)
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Hello!
I am trying to use phageterm, but only output i got were .pdf report and .csv statistics. No fasta file.
There were no errors. I used 2 paired fastq.gz files and valid contig for -r.
Any ideas what could go wrong?
Thank you in advance
Hello,
Please tell me more about the results. What type of phage have you got in the PDF report? I ask because a fasta file is not generated for all types of phage. (If your phage is type T4 with no precise termini, we cant generate a fasta file reorganized to start at the termini because there is no termini). So the absence of a fasta file is not necessarily a bug. But I need more info to know if its a bug here or not. Thank you :)