Protein Family Alignment Annotation Tool svncode

Lots of changes...too numerous to mention them all but main ones:

Column Hiding bug fixed
Edit Annotations dialog now shows
* seq annotations
* all informatoin for residue annotations
Select residues by annotation bug fixed
Fixed bug to scroll to given residue when residue selected (from column hiding)
Fixed bug to scroll to given seq when residue selected (from seq hiding)
Fix for Arrow keys but when hidden columns or hidden sequences
Structure browser now shows the author's residue #s in selection panel
Misc menu renaming
Checked in sample files for Seq and Residue annotation
Checked in sample .fa file

Lots of changes...too numerous to mention them all but main ones:

Column Hiding bug fixed
Edit Annotations dialog now shows
* seq annotations
* all informatoin for residue annotations
Select residues by annotation bug fixed
Fixed bug to scroll to given residue when residue selected (from column hiding)
Fixed bug to scroll to given seq when residue selected (from seq hiding)
Fix for Arrow keys but when hidden columns or hidden sequences
Structure browser now shows the author's residue #s in selection panel
Misc menu renaming
Checked in sample files for Seq and Residue annotation
Checked in sample .fa file

Paul's mixed bag of changes including:

* Column filtering
* Load/Save in .pfaam of Seq Annot,ResAnnot,ColumnFilter
* Fix for Column Selection after hiding columns
* PRint selected nodes bug
* Visible Clusters vs Clusters for Verticle Bar
* default block size change
* control + arrow key for shifting seq

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Paul's 6th round of ATV changes and
Sequence Annotation import and
misc fixes

Changes marked with // phdana atv6 ->
or marked with // phdana seq ann ->

Changes include:

* ATV advanced search
* ATV export
* ATV print selectd nodes bug fix
* Import Sequence Annotation
* Sequence Annotation Dialog
* Rename/add stuff in Pfaat Edit menu
* Rename stuff on Edit Annotations Dialog
* misc bug fixes

Paul Dana's 6th round of ATV changes

changes marked witih // phdana atv6 ->

Changes include
* fix for Print Selected -> sizes correctly
* Export Tags -> exports all possible tags to .csv vile
* Import Tags -> can accept the output of Export tags

Fix for User Defined Properties not displaying in ATV Advanced Search Dialog

Paul Dana's 5th round of ATV changes

Changes marked with // phdana atv5 ->

Changes include

* bug fix for import custom/standard tags
* Advanced Search Dialog

PdbRibbonRenderer has been edited to allow the correct display of secondary structure ribbons.