changes marked with: // phdana atv2 ->
(unless said changes were already in middle of existing //phdana atv ->)
Changes include:
Analysis > Import New Hampshire renamed to File > Open Rooted Tree
Box next to seq name now shows selection status
Search works for synonyms equivalently to seq name
# synonyms increased to 10 from 5
Clustering based on cut
Fixed cutting algorithm
ClusterID support for NHX read/write and import from file
Added Coloring modes to View: none, by rgb, by cluster id, by LogL
Hide flags supported on node properties dialog
Hide flags for all properties now implemented (not just name,branchlength)
Fixed misc bugs
