Protein Family Alignment Annotation Tool svncode

Fix bug in JmolForPfaatUnsigned.jar where the script queue would occasionally have null values that would crash jmol during coloring by pfaat and prevent further changes to the structure from the console or right-click menu.

Fix bug in JmolForPfaatUnsigned.jar where the script queue would occasionally have null values that would crash jmol during coloring by pfaat and prevent further changes to the structure from the console or right-click menu

1) Includes a failed attempt to properly handle taxonomyid and it varios spellling forms when adding markers. This needs to be revisitied. 2) Added / specified argument types for various Iterators, JComboBoxes etc to address warnings

move from src/org/pfaat/gui/msa/component to src/org/pfaat/gui/msa/edit/action/

remove unused imports

com/neogenesis is fully migrated to org.pfaat

delete

move src/com/neogenesis/pfaat/pdb/* to src/org/pfaat/core/structure/

Not used

unused