Protein Family Alignment Annotation Tool svncode

1) Includes a failed attempt to properly handle taxonomyid and it varios spellling forms when adding markers. This needs to be revisitied. 2) Added / specified argument types for various Iterators, JComboBoxes etc to address warnings

move from src/org/pfaat/gui/msa/component to src/org/pfaat/gui/msa/edit/action/

remove unused imports

com/neogenesis is fully migrated to org.pfaat

delete

move src/com/neogenesis/pfaat/pdb/* to src/org/pfaat/core/structure/

Not used

unused

Unused

unused