Protein Family Alignment Annotation Tool svncode

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Commit [r1961]  Maximize  Restore  History

move src/com/neogenesis/pfaat/pdb/* to src/org/pfaat/core/structure/

Authored by: dcaffrey 2023-07-27

Browse code at this revision

Parent: [r1960]

Child: [r1962]

<< < 1 2 3 4 > >> (Page 2 of 4)

removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbUtil.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/ResiduePairDistance.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/SsapAlign.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/SsapAlignLoader.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/VanDerWaalsRadius.java
changed	/trunk/pfaat/src/org/pfaat/commandline/msa/GetConservationScoreForClusters.java
changed	/trunk/pfaat/src/org/pfaat/commandline/msa/GetConservationScoresForClustersWithResidueAnnotation.java
changed	/trunk/pfaat/src/org/pfaat/commandline/msa/SpecificityPatch.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/AssociatePdbChainToAlignment.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/CalculateInterfaceResiduesInPfaat.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/CalculateResidueAccessibilitiesWithinPfaat.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetBindingSiteResiduesForLigand.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetCavity.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetChainLengths.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetChains.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetFractionOfResiduesWithinDistance.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetInterfaceResidues.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetMeanPairwiseDistance.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetMinDistanceBetweenChains.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetMinDistanceBetweenResidueSet1AndResidueSet2.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetMinPairwiseDistances.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetPatches.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetProximalResiduesBetweenChains.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetProximalResiduesWithinChains.java
changed	/trunk/pfaat/src/org/pfaat/commandline/structure/GetResidueAccessibility.java

/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbUtil.java

File was removed.

/trunk/pfaat/src/com/neogenesis/pfaat/pdb/ResiduePairDistance.java

File was removed.

/trunk/pfaat/src/com/neogenesis/pfaat/pdb/SsapAlign.java

File was removed.

/trunk/pfaat/src/com/neogenesis/pfaat/pdb/SsapAlignLoader.java

File was removed.

/trunk/pfaat/src/com/neogenesis/pfaat/pdb/VanDerWaalsRadius.java

File was removed.

/trunk/pfaat/src/org/pfaat/commandline/msa/GetConservationScoreForClusters.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/GetConservationScoresForClustersWithResidueAnnotation.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/msa/SpecificityPatch.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/AssociatePdbChainToAlignment.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/CalculateInterfaceResiduesInPfaat.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/CalculateResidueAccessibilitiesWithinPfaat.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetBindingSiteResiduesForLigand.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetCavity.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetChainLengths.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetChains.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetFractionOfResiduesWithinDistance.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetInterfaceResidues.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetMeanPairwiseDistance.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetMinDistanceBetweenChains.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetMinDistanceBetweenResidueSet1AndResidueSet2.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetMinPairwiseDistances.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetPatches.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetProximalResiduesBetweenChains.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetProximalResiduesWithinChains.java Diff Switch to side-by-side view

/trunk/pfaat/src/org/pfaat/commandline/structure/GetResidueAccessibility.java Diff Switch to side-by-side view

<< < 1 2 3 4 > >> (Page 2 of 4)

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