Protein Family Alignment Annotation Tool svncode

removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/Arc.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/AsaCalculator.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/AsaCalculator2.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/BasicpatchCalculator.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/Cubes.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/Neighbours.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/NeighboursArray.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PatchBuilder.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PatchBuilderForPathConnectedResidues.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PatchBuilderForPathConnectedResiduesCavity.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PatchGraph.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PatchGraph2PatchGraphComparison.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbAminoAcidCodeAndProperties.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbAtom.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbAtomContainer.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbAtomPair.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbBond.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbChain.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbLoader.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbResidue.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbResidueData.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbStructure.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbStructureCubeCover.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbStructureTools.java
removed	/trunk/pfaat/src/com/neogenesis/pfaat/pdb/PdbSurfaceChain.java