Protein Family Alignment Annotation Tool svncode

Created/extracted method loadPfaatProperties and call it before createMenuBarAndMenuItems . The code was previously buried in initializeFileMenu

Renamed to ColorSequenceNameAndResiduesDialog.java and StartOfUserDefinedNumberDialog.java

Renamed to better reflect their purpose. Were previously known as StartIndexDialog.java and ColorSequenceDialog.java

added short comment

1. Added FileSequenceActionEventHandler to handle events from Right-click seq and File-> Sequence-> * 2. Added SequenceSelectorDialog.java which will gradually replace AlignmentNamePanel.sequenceSelector

delete

Moved to org.pfaat

1. FileResiduePropertiesActionEventHandler now handles the export of residue proeprties. 2. Various update to imports based on renaming of classes to ResiduePhysChemPropertiesExporterOptions.java ResiduePhysChemPropertiesExporterOptionsChooser.java CorrelateResiduePhysChemPropertiesManager

Rename

Rename