Protein Family Alignment Annotation Tool svncode

1. File/Right-click is now handled by src/org/pfaat/gui/msa/file/actioneventhandler/FileSequenceAnnotationActionEventHandler.java 2. Fixed various bugs in src/com/neogenesis/pfaat/srs/UniprotEntry.java that were causing import to fail or incorrectly parse the most recent version of uniprot

Move AlignmentDifferenceDialog.java to src/org/pfaat/gui/msa/file/action/

Address all warnings in the class

All actions associated with File->Structure-> xxx and Right-click-Structure-related-menu-items are now handled by src/org/pfaat/gui/msa/file/actioneventhandler/FileStructureActionEventHandler.java

Removed brace-contained text

Add More helpful message

move to org.pfaat