Moved src/com/neogenesis/pfaat/common/progressbar to src/org/pfaat/gui/common/
copied over from pls module
Moved Version.java to src/org/pfaat/core/msa/help
removed import that is no longer used
comment out dead code
No longer used
remove import to old package loacation for print.
new package strucure
Move Print Classes to src/org/pfaat/gui/msa/file/action/
