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Commit [r1772]  Maximize  Restore  History

1) Renamed Sequence.getColumnAnnotation to Sequence.getResidueAnnotation. 2) The add annotions tab in EditResAnnDialog.java now provided enter text prompts, no longer has up or down buttons, provides warning if the user forgets to enter a residue annotation name or value after creating a row via the add button and then clicking save.

dcaffrey 2023-06-09

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Parent: [r1771]

Child: [r1773]

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changed /trunk/pfaat/pfaatProperties/pfaat.properties
changed /trunk/pfaat/src/com/neogenesis/pfaat/Alignment.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/AlignmentPanel.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/ConsensusSequence.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/EditResAnnDialog.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/analysis/ComputeSolventAccessibility/CalculateDeltaRsas.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/analysis/ComputeSolventAccessibility/CalculateRsas.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/analysis/ComputeSolventAccessibility/ComputeChangeInSolventAccessibilityAction.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/analysis/ComputeSolventAccessibility/ComputeSolventAccessibilityToStAction.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/analysis/filter/FilterAction.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/analysis/plsr/LabelFileGenerator.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/EmpiricAl.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/GetMutualInformationForShortReads.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/BindingMatrix.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/BindingMatrixCentral.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/GetRepresentedResidues.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/GetResidueCounts.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/GetResidueCountsQuickly.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/annotations/GetTwoResidueAnnotations.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/conservation/GetConservationScoresForClustersWithResidueAnnotation.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/conservation/ModifiedShannon.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/conservation/NumberOfIdenticalResiduesForSelect.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/conservation/NumberOfNonIdenticalResiduesForSelect.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/conservation/PamForSelect.java
changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/conservation/PidForSelect.java
/trunk/pfaat/pfaatProperties/pfaat.properties Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/Alignment.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentPanel.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/ConsensusSequence.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/EditResAnnDialog.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/analysis/ComputeSolventAccessibility/CalculateDeltaRsas.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/analysis/ComputeSolventAccessibility/CalculateRsas.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/analysis/ComputeSolventAccessibility/ComputeChangeInSolventAccessibilityAction.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/analysis/ComputeSolventAccessibility/ComputeSolventAccessibilityToStAction.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/analysis/filter/FilterAction.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/analysis/plsr/LabelFileGenerator.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/commandline/EmpiricAl.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/GetMutualInformationForShortReads.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/BindingMatrix.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/BindingMatrixCentral.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/GetRepresentedResidues.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/GetResidueCounts.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/GetResidueCountsQuickly.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/annotations/GetTwoResidueAnnotations.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/conservation/GetConservationScoresForClustersWithResidueAnnotation.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/conservation/ModifiedShannon.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/conservation/NumberOfIdenticalResiduesForSelect.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/conservation/NumberOfNonIdenticalResiduesForSelect.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/conservation/PamForSelect.java Diff Switch to side-by-side view
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/trunk/pfaat/src/com/neogenesis/pfaat/commandline/align/residue/conservation/PidForSelect.java Diff Switch to side-by-side view
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