Protein Family Alignment Annotation Tool svncode

Brought to you by: carlsonjf, dcaffrey, eshuang, simonxi

Commit [r1764] Maximize Restore History

1) Add boolean param for getAllResidueAnnotations. 2) parameterize ArrayList and others in Alignment.java

Authored by: dcaffrey 2023-06-07

Browse code at this revision

Parent: [r1763]

Child: [r1765]

changed	/trunk/pfaat/src/com/neogenesis/pfaat/Alignment.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentFrame.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/ColumnAnnotationComponent.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/DisplayProperties.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/EditSequenceAnnotationsDialog.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/SequenceComponent.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/analysis/plsr/ui/build/PLSROutputOptionsChooser.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/io/PfaatLoader.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/io/PfamLoader.java
changed	/trunk/pfaat/src/com/neogenesis/pfaat/srs/ImportUniprotAnnotationsDialog.java

/trunk/pfaat/src/com/neogenesis/pfaat/Alignment.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/AlignmentFrame.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/ColumnAnnotationComponent.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/DisplayProperties.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/EditSequenceAnnotationsDialog.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/SequenceComponent.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/analysis/plsr/ui/build/PLSROutputOptionsChooser.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/io/PfaatLoader.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/io/PfamLoader.java Diff Switch to side-by-side view

/trunk/pfaat/src/com/neogenesis/pfaat/srs/ImportUniprotAnnotationsDialog.java Diff Switch to side-by-side view