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Improved logic for various option combos and improved description of the options and usage

dcaffrey 2023-06-07

changed /trunk/pfaat/src/com/neogenesis/pfaat/commandline/structure/GetMinDistanceBetweenChains.java
/trunk/pfaat/src/com/neogenesis/pfaat/commandline/structure/GetMinDistanceBetweenChains.java Diff Switch to side-by-side view
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