Protein Family Alignment Annotation Tool svncode

Brought to you by: carlsonjf, dcaffrey, eshuang, simonxi

svncode Commit Log

Commit	Date
[r1662] by dcaffrey refactored to handle extra param in toNewHampshire	2023-03-09 13:53:01	Tree
[r1661] by dcaffrey add error handling with PfaatErrorAndInfoDialog	2023-03-09 13:51:37	Tree
[r1660] by dcaffrey some basic changes to usage	2023-03-09 13:50:11	Tree
[r1659] by dcaffrey added java doc	2023-03-09 13:49:00	Tree
[r1658] by dcaffrey I think this was a bug fix	2023-03-09 13:47:42	Tree
[r1657] by dcaffrey some basic refactoring	2023-03-09 13:46:24	Tree
[r1656] by dcaffrey getNodesWithMatchingSpecies now reurns Node[] instead of vector, toNewHampshire now takes includeDistances param	2023-03-09 13:44:34	Tree
[r1655] by dcaffrey some basic refactoring and handling of DCS nodes created by treebest	2023-03-09 13:37:45	Tree
[r1654] by dcaffrey I think thes changes are related to branch coloring via ParseTreebest	2023-03-09 13:33:55	Tree
[r1653] by dcaffrey small changes to reportUsage	2023-03-09 13:03:44	Tree

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