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#6 Local BLAST parsing not working

open
nobody
None
5
2005-07-08
2005-07-08
abisko
No

A local BLAST search against a 'self-made' database
(formatdb) from a FASTA dataset, using e.g. this
identifier:
">At2g18960 f19f24 plasma membrane proton ATPase (PMA)"
does not show any result (only the blast header).
However, if the blastall command is run from
command-line, the expected output is produced. I guess
the parsing scripts cannot deal with the different
identifier?

Discussion

  • abisko

    abisko - 2005-07-12

    details on input and output data

     
  • melissa

    melissa - 2012-12-13

    I'm having the same problem, what did you do to get around this?

     

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