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Re: [Pcsim-users] problem with xerces in Ubuntu 8.04
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From: Grzegorz M. W. <gmw...@gm...> - 2008-12-12 08:58:34
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Hi!
Thank you Thomas. Unfortunately this didn't work, however, after
trying all combinantions I found (as I suppose) a bug in the file
./cppunittests/CMakeLists.txt there is in the 16th line
${XERCES-LIBS}
and should be
${XERCES_LIBS}
with dash and without hyphen :-))))
I know, I would never find it without your seuggestion concerning the
sequence of linking librarier. Thank you!!!!!
After making the change the build is successful. I am very, very happy...
Best regards to all pcsim users,
Grzegorz
On Thu, Dec 11, 2008 at 8:33 AM, Natschläger Thomas
<Tho...@sc...> wrote:
> Hi!
>
> If I remember correctly a college of mine here at SCCG has already encountered the problem. The fix was to change the order of lib's against we link. So we tried to find a proper oder of
>
> TARGET_LINK_LIBRARIES( pcsim_test
> pcsim
> ${XERCES_LIBS}
> ${MPI_LIBS}
> ${GSL_LIBS}
> ${CPPUNIT_LIBS}
> ${BOOST_THREAD}
> ${BOOST_DATETIME}
> ${STLP_LIBS}
> )
>
> If I remember correctly we put ${XERCES_LIBS} more towards the end of that list in
> cppunit/CMakeLists.txt
> python/CMakeLists.txt
> java/CMakeLists.txt
>
>
> I hope this helps. We have to check this more thoroughly.
>
> -thomas natschlaeger
>
>
> ________________________________
>
> Von: Grzegorz M. Wojcik [mailto:gmw...@gm...]
> Gesendet: Mi 12/10/2008 6:19
> An: pcs...@li...
> Betreff: [Pcsim-users] problem with xerces in Ubuntu 8.04
>
>
>
> Hello!
>
> I came across serious problem when trying to compile pcsim on Ubuntu
> 8.04 Hardy Heron. I receive some errors concerning xerces-c, I suppose
> in same the end of my compilation process. They look like:
>
> NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_710XMLRefInfoD0Ev[xercesc_2_7::XMLRefInfo::~XMLRefInfo()]+0x35):
> undefined reference to `xercesc_2_7::XMemory::operator delete(void*)'
>
> with very often repeating phrase: undefined reference to `xercesc_2_7
>
> I have libxerces-c v. 2.7.0 located in /usr/lib (I think it is typical
> location).
>
> I was trying with no result doing the following things:
>
> 1) Telling the linker where libxerces is located.
> 2) libxerces 2.8
> 3) libxerces 3.0
> 4) compiling libxerces of all above versions from te scratch by the
> same compiler I compile pcsim
>
> To make matters worse (or better) when I run python setup.py test - a
> lot of tests end up with a positive 'OK' message.
>
> Do you have any ideas?
>
> best regards,
>
> Grzegorz
>
> P.S. Here is the whole set of error messages:
>
>
> [ 63%] Building CXX object
> python/CMakeFiles/pypcsim.dir/pypcsim/CuBaSyn_AlphaFunction.pypp.o
> [ 63%] Building CXX object
> cppunittests/CMakeFiles/pcsim_test.dir/HHNeuronTraubMiles91Test.o
> [ 64%] Building CXX object
> python/CMakeFiles/pypcsim.dir/pypcsim/SpatialSimObjectPopulation.pypp.o
> [ 64%] Building CXX object cppunittests/CMakeFiles/pcsim_test.dir/commonUtils.o
> Linking CXX executable ../bin/pcsim_test
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o: In function
> `xercesc_2_7::DefaultHandler::fatalError(xercesc_2_7::SAXParseException
> const&)':
> NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_714DefaultHandler10fatalErrorERKNS_17SAXParseExceptionE[xercesc_2_7::DefaultHandler::fatalError(xercesc_2_7::SAXParseException
> const&)]+0x2b): undefined reference to
> `xercesc_2_7::SAXParseException::SAXParseException(xercesc_2_7::SAXParseException
> const&)'
> NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_714DefaultHandler10fatalErrorERKNS_17SAXParseExceptionE[xercesc_2_7::DefaultHandler::fatalError(xercesc_2_7::SAXParseException
> const&)]+0x4b): undefined reference to
> `xercesc_2_7::SAXParseException::~SAXParseException()'
> NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_714DefaultHandler10fatalErrorERKNS_17SAXParseExceptionE[xercesc_2_7::DefaultHandler::fatalError(xercesc_2_7::SAXParseException
> const&)]+0x50): undefined reference to `typeinfo for
> xercesc_2_7::SAXParseException'
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o: In function
> `xercesc_2_7::DTDEntityDecl::~DTDEntityDecl()':
> NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_713DTDEntityDeclD0Ev[xercesc_2_7::DTDEntityDecl::~DTDEntityDecl()]+0xc):
> undefined reference to `xercesc_2_7::XMLEntityDecl::~XMLEntityDecl()'
> NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_713DTDEntityDeclD0Ev[xercesc_2_7::DTDEntityDecl::~DTDEntityDecl()]+0x14):
> undefined reference to `xercesc_2_7::XMemory::operator delete(void*)'
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o: In function
> `xercesc_2_7::DTDEntityDecl::~DTDEntityDecl()':
> NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_713DTDEntityDeclD1Ev[xercesc_2_7::DTDEntityDecl::~DTDEntityDecl()]+0xc):
> undefined reference to `xercesc_2_7::XMLEntityDecl::~XMLEntityDecl()'
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o: In function
> `xercesc_2_7::XMLRefInfo::~XMLRefInfo()':
> NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_710XMLRefInfoD0Ev[xercesc_2_7::XMLRefInfo::~XMLRefInfo()]+0x35):
> undefined reference to `xercesc_2_7::XMemory::operator delete(void*)'
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o: In function
> `xercesc_2_7::XMLAttDefList::~XMLAttDefList()':
> NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_713XMLAttDefListD0Ev[xercesc_2_7::XMLAttDefList::~XMLAttDefList()]+0xc):
> undefined reference to `xercesc_2_7::XMemory::operator delete(void*)'
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_710XMLRefInfoE[vtable
> for xercesc_2_7::XMLRefInfo]+0x20): undefined reference to
> `xercesc_2_7::XMLRefInfo::isSerializable() const'
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_710XMLRefInfoE[vtable
> for xercesc_2_7::XMLRefInfo]+0x28): undefined reference to
> `xercesc_2_7::XMLRefInfo::serialize(xercesc_2_7::XSerializeEngine&)'
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_710XMLRefInfoE[vtable
> for xercesc_2_7::XMLRefInfo]+0x30): undefined reference to
> `xercesc_2_7::XMLRefInfo::getProtoType() const'
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_713DTDEntityDeclE[vtable
> for xercesc_2_7::DTDEntityDecl]+0x20): undefined reference to
> `xercesc_2_7::DTDEntityDecl::isSerializable() const'
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_713DTDEntityDeclE[vtable
> for xercesc_2_7::DTDEntityDecl]+0x28): undefined reference to
> `xercesc_2_7::DTDEntityDecl::serialize(xercesc_2_7::XSerializeEngine&)'
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_713DTDEntityDeclE[vtable
> for xercesc_2_7::DTDEntityDecl]+0x30): undefined reference to
> `xercesc_2_7::DTDEntityDecl::getProtoType() const'
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_713XMLAttDefListE[vtable
> for xercesc_2_7::XMLAttDefList]+0x20): undefined reference to
> `xercesc_2_7::XMLAttDefList::isSerializable() const'
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_713XMLAttDefListE[vtable
> for xercesc_2_7::XMLAttDefList]+0x28): undefined reference to
> `xercesc_2_7::XMLAttDefList::serialize(xercesc_2_7::XSerializeEngine&)'
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_713XMLAttDefListE[vtable
> for xercesc_2_7::XMLAttDefList]+0x30): undefined reference to
> `xercesc_2_7::XMLAttDefList::getProtoType() const'
> CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTIN11xercesc_2_713DTDEntityDeclE[typeinfo
> for xercesc_2_7::DTDEntityDecl]+0x10): undefined reference to
> `typeinfo for xercesc_2_7::XMLEntityDecl'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::SAX2XMLReaderImpl::SAX2XMLReaderImpl(xercesc_2_7::MemoryManager*,
> xercesc_2_7::XMLGrammarPool*)'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::XMLUni::fgXercesValidationErrorAsFatal'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::XMemory::operator delete(void*,
> xercesc_2_7::MemoryManager*)'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::XMLUni::fgSAX2CoreValidation'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::SAXParseException::SAXParseException(unsigned
> short const*, unsigned short const*, unsigned short const*, long,
> long, xercesc_2_7::MemoryManager*)'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::SAXParseException::getPublicId() const'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::SAXParseException::getSystemId() const'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::XMLUni::fgSAX2CoreNameSpacePrefixes'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::XMLUni::fgXercescDefaultLocale'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::XMLUni::fgXercesSchema'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::XMLUni::fgXercesSchemaFullChecking'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::XMLPlatformUtils::Terminate()'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::SAXParseException::getColumnNumber() const'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::SchemaSymbols::fgURI_XSI'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::XMLUni::fgXercesSchemaExternalSchemaLocation'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::XMLPlatformUtils::fgMemoryManager'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::XMemory::operator new(unsigned long,
> xercesc_2_7::MemoryManager*)'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::XMLUni::fgSAX2CoreNameSpaces'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::XMLPlatformUtils::Initialize(char const*,
> char const*, xercesc_2_7::PanicHandler*, xercesc_2_7::MemoryManager*,
> bool)'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::SchemaSymbols::fgXSI_TYPE'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::SAXParseException::getLineNumber() const'
> /home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
> reference to `xercesc_2_7::XMLUni::fgXercesSchemaExternalNoNameSpaceSchemaLocation'
> collect2: ld returned 1 exit status
>
> --
> gmwojcik
>
> Registered Linux User #388348
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--
gmwojcik
Registered Linux User #388348
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