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Re: [Pcsim-users] problem with xerces in Ubuntu 8.04
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From: Natschläger T. <Tho...@sc...> - 2008-12-11 08:03:39
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Hi!
If I remember correctly a college of mine here at SCCG has already encountered the problem. The fix was to change the order of lib's against we link. So we tried to find a proper oder of
TARGET_LINK_LIBRARIES( pcsim_test
pcsim
${XERCES_LIBS}
${MPI_LIBS}
${GSL_LIBS}
${CPPUNIT_LIBS}
${BOOST_THREAD}
${BOOST_DATETIME}
${STLP_LIBS}
)
If I remember correctly we put ${XERCES_LIBS} more towards the end of that list in
cppunit/CMakeLists.txt
python/CMakeLists.txt
java/CMakeLists.txt
I hope this helps. We have to check this more thoroughly.
-thomas natschlaeger
________________________________
Von: Grzegorz M. Wojcik [mailto:gmw...@gm...]
Gesendet: Mi 12/10/2008 6:19
An: pcs...@li...
Betreff: [Pcsim-users] problem with xerces in Ubuntu 8.04
Hello!
I came across serious problem when trying to compile pcsim on Ubuntu
8.04 Hardy Heron. I receive some errors concerning xerces-c, I suppose
in same the end of my compilation process. They look like:
NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_710XMLRefInfoD0Ev[xercesc_2_7::XMLRefInfo::~XMLRefInfo()]+0x35):
undefined reference to `xercesc_2_7::XMemory::operator delete(void*)'
with very often repeating phrase: undefined reference to `xercesc_2_7
I have libxerces-c v. 2.7.0 located in /usr/lib (I think it is typical
location).
I was trying with no result doing the following things:
1) Telling the linker where libxerces is located.
2) libxerces 2.8
3) libxerces 3.0
4) compiling libxerces of all above versions from te scratch by the
same compiler I compile pcsim
To make matters worse (or better) when I run python setup.py test - a
lot of tests end up with a positive 'OK' message.
Do you have any ideas?
best regards,
Grzegorz
P.S. Here is the whole set of error messages:
[ 63%] Building CXX object
python/CMakeFiles/pypcsim.dir/pypcsim/CuBaSyn_AlphaFunction.pypp.o
[ 63%] Building CXX object
cppunittests/CMakeFiles/pcsim_test.dir/HHNeuronTraubMiles91Test.o
[ 64%] Building CXX object
python/CMakeFiles/pypcsim.dir/pypcsim/SpatialSimObjectPopulation.pypp.o
[ 64%] Building CXX object cppunittests/CMakeFiles/pcsim_test.dir/commonUtils.o
Linking CXX executable ../bin/pcsim_test
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o: In function
`xercesc_2_7::DefaultHandler::fatalError(xercesc_2_7::SAXParseException
const&)':
NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_714DefaultHandler10fatalErrorERKNS_17SAXParseExceptionE[xercesc_2_7::DefaultHandler::fatalError(xercesc_2_7::SAXParseException
const&)]+0x2b): undefined reference to
`xercesc_2_7::SAXParseException::SAXParseException(xercesc_2_7::SAXParseException
const&)'
NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_714DefaultHandler10fatalErrorERKNS_17SAXParseExceptionE[xercesc_2_7::DefaultHandler::fatalError(xercesc_2_7::SAXParseException
const&)]+0x4b): undefined reference to
`xercesc_2_7::SAXParseException::~SAXParseException()'
NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_714DefaultHandler10fatalErrorERKNS_17SAXParseExceptionE[xercesc_2_7::DefaultHandler::fatalError(xercesc_2_7::SAXParseException
const&)]+0x50): undefined reference to `typeinfo for
xercesc_2_7::SAXParseException'
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o: In function
`xercesc_2_7::DTDEntityDecl::~DTDEntityDecl()':
NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_713DTDEntityDeclD0Ev[xercesc_2_7::DTDEntityDecl::~DTDEntityDecl()]+0xc):
undefined reference to `xercesc_2_7::XMLEntityDecl::~XMLEntityDecl()'
NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_713DTDEntityDeclD0Ev[xercesc_2_7::DTDEntityDecl::~DTDEntityDecl()]+0x14):
undefined reference to `xercesc_2_7::XMemory::operator delete(void*)'
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o: In function
`xercesc_2_7::DTDEntityDecl::~DTDEntityDecl()':
NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_713DTDEntityDeclD1Ev[xercesc_2_7::DTDEntityDecl::~DTDEntityDecl()]+0xc):
undefined reference to `xercesc_2_7::XMLEntityDecl::~XMLEntityDecl()'
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o: In function
`xercesc_2_7::XMLRefInfo::~XMLRefInfo()':
NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_710XMLRefInfoD0Ev[xercesc_2_7::XMLRefInfo::~XMLRefInfo()]+0x35):
undefined reference to `xercesc_2_7::XMemory::operator delete(void*)'
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o: In function
`xercesc_2_7::XMLAttDefList::~XMLAttDefList()':
NeuroMLImporterTest.cpp:(.text._ZN11xercesc_2_713XMLAttDefListD0Ev[xercesc_2_7::XMLAttDefList::~XMLAttDefList()]+0xc):
undefined reference to `xercesc_2_7::XMemory::operator delete(void*)'
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_710XMLRefInfoE[vtable
for xercesc_2_7::XMLRefInfo]+0x20): undefined reference to
`xercesc_2_7::XMLRefInfo::isSerializable() const'
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_710XMLRefInfoE[vtable
for xercesc_2_7::XMLRefInfo]+0x28): undefined reference to
`xercesc_2_7::XMLRefInfo::serialize(xercesc_2_7::XSerializeEngine&)'
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_710XMLRefInfoE[vtable
for xercesc_2_7::XMLRefInfo]+0x30): undefined reference to
`xercesc_2_7::XMLRefInfo::getProtoType() const'
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_713DTDEntityDeclE[vtable
for xercesc_2_7::DTDEntityDecl]+0x20): undefined reference to
`xercesc_2_7::DTDEntityDecl::isSerializable() const'
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_713DTDEntityDeclE[vtable
for xercesc_2_7::DTDEntityDecl]+0x28): undefined reference to
`xercesc_2_7::DTDEntityDecl::serialize(xercesc_2_7::XSerializeEngine&)'
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_713DTDEntityDeclE[vtable
for xercesc_2_7::DTDEntityDecl]+0x30): undefined reference to
`xercesc_2_7::DTDEntityDecl::getProtoType() const'
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_713XMLAttDefListE[vtable
for xercesc_2_7::XMLAttDefList]+0x20): undefined reference to
`xercesc_2_7::XMLAttDefList::isSerializable() const'
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_713XMLAttDefListE[vtable
for xercesc_2_7::XMLAttDefList]+0x28): undefined reference to
`xercesc_2_7::XMLAttDefList::serialize(xercesc_2_7::XSerializeEngine&)'
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTVN11xercesc_2_713XMLAttDefListE[vtable
for xercesc_2_7::XMLAttDefList]+0x30): undefined reference to
`xercesc_2_7::XMLAttDefList::getProtoType() const'
CMakeFiles/pcsim_test.dir/NeuroMLImporterTest.o:(.rodata._ZTIN11xercesc_2_713DTDEntityDeclE[typeinfo
for xercesc_2_7::DTDEntityDecl]+0x10): undefined reference to
`typeinfo for xercesc_2_7::XMLEntityDecl'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::SAX2XMLReaderImpl::SAX2XMLReaderImpl(xercesc_2_7::MemoryManager*,
xercesc_2_7::XMLGrammarPool*)'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::XMLUni::fgXercesValidationErrorAsFatal'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::XMemory::operator delete(void*,
xercesc_2_7::MemoryManager*)'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::XMLUni::fgSAX2CoreValidation'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::SAXParseException::SAXParseException(unsigned
short const*, unsigned short const*, unsigned short const*, long,
long, xercesc_2_7::MemoryManager*)'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::SAXParseException::getPublicId() const'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::SAXParseException::getSystemId() const'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::XMLUni::fgSAX2CoreNameSpacePrefixes'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::XMLUni::fgXercescDefaultLocale'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::XMLUni::fgXercesSchema'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::XMLUni::fgXercesSchemaFullChecking'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::XMLPlatformUtils::Terminate()'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::SAXParseException::getColumnNumber() const'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::SchemaSymbols::fgURI_XSI'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::XMLUni::fgXercesSchemaExternalSchemaLocation'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::XMLPlatformUtils::fgMemoryManager'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::XMemory::operator new(unsigned long,
xercesc_2_7::MemoryManager*)'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::XMLUni::fgSAX2CoreNameSpaces'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::XMLPlatformUtils::Initialize(char const*,
char const*, xercesc_2_7::PanicHandler*, xercesc_2_7::MemoryManager*,
bool)'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::SchemaSymbols::fgXSI_TYPE'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::SAXParseException::getLineNumber() const'
/home/gmwojcik/install/pypcsim-0.5.2/_build/lib/libpcsim.so: undefined
reference to `xercesc_2_7::XMLUni::fgXercesSchemaExternalNoNameSpaceSchemaLocation'
collect2: ld returned 1 exit status
--
gmwojcik
Registered Linux User #388348
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