I observed a similar WARNING messages that were previously reported (https://sourceforge.net/p/pb-jelly/discussion/general/thread/63d16c87/#9b45) in my err file from support stage running:
I have already checked the reference ids and the ids in .m4 file and they are exactly the same (the one re-name by setup stage). Why do these warnings appear, then? How can I solve it?
Thank you so much in advance,
Regards,
Cristina Osuna
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I observed a similar WARNING messages that were previously reported (https://sourceforge.net/p/pb-jelly/discussion/general/thread/63d16c87/#9b45) in my err file from support stage running:
2017-02-18 01:04:42,080 [INFO] Running /software/shared/apps/x86_64/PBJelly/12.9.14/SupportGaps.py /scratch/seminavis/17-new_assemblies_D6/PBjelly/mapping/SCall_corrected.fasta.m4 /scratch/seminavis/17-new_assemblies_D6/cleaning/D6_gapClosed-1000/D6_gapClosed-1000-hdhd_hhdd-85-75-20_2017-02-07_175833/D6_gapClosed-1000-hdhd_hhdd-85-75-20.gapInfo.bed /scratch/seminavis/17-new_assemblies_D6/PBjelly/support/SCall_corrected.fasta.gapCans
[...]
2017-02-18 01:04:59,153 [WARNING] Missed adapter in read! m150824_141845_42202_c100846352550000001823188212311525_s1_p0/84342/26285_30155
2017-02-18 01:04:59,154 [WARNING] Missed adapter in read! m150828_055617_42202_c100821182550000001823174411031573_s1_p0/119124/4144_19249
2017-02-18 01:04:59,154 [WARNING] Missed adapter in read! m150828_101837_42202_c100821182550000001823174411031574_s1_p0/142212/2618_9553
2017-02-18 01:04:59,154 [WARNING] Missed adapter in read! m150825_032048_42202_c100814532550000001823181311031530_s1_p0/62493/2181_17365
2017-02-18 01:04:59,154 [WARNING] Missed adapter in read! m150825_032048_42202_c100814532550000001823181311031530_s1_p0/62493/2181_17365
2017-02-18 01:04:59,154 [WARNING] Missed adapter in read! m150825_032048_42202_c100814532550000001823181311031530_s1_p0/62493/2181_17365
2017-02-18 01:07:37,803 [INFO] Finished Support!
I have already checked the reference ids and the ids in .m4 file and they are exactly the same (the one re-name by setup stage). Why do these warnings appear, then? How can I solve it?
Thank you so much in advance,
Regards,
Cristina Osuna