medhat - 2017-11-04

Hi,

I'm using PBSuite version 15.8.24

Honey.py spots was used to identify structure variations.

one line from the output:

1 1211650 1211854 INS 353 zscore=-11.943;szMean=353.000;sz3rdQ=550.000;szCount=5.000;strandCnt=2,3;szMedian=547.000;groupName=1;coverage=14.000;sz1stQ=60.000;mqfilt=0.000

this means that the start of the insertion in the genome is 1211650 and the end 1211854?!

is not the insertion should happen in one point in the genome (so the start and the end should be the same as in https://sourceforge.net/p/pb-jelly/discussion/pbhtiks/thread/9b263cf1/), how the tool calculate the start and the end?

 

Last edit: medhat 2017-11-04