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corrected reads

General Discussion
Kevin Fengler
2016-11-15
2016-11-16

  • Kevin Fengler

    Kevin Fengler - 2016-11-15

    Can corrected PacBio reads be fed to PBJelly instead of raw reads? Seem like this would work better for gap filling.

    Thanks,
    KF

     

    • Amine

      Amine - 2016-11-16

      Hi Kevin,

      Yes you can use corrected Pacbio reads for gap filling with PBJelly.

      Best,
      Amine

      Le 16/11/2016 à 11:05, Mohamed Amine Chebbi a écrit :

      Hi Kevin,

      Yes you can use corrected Pacbio reads for gap filling with PBJelly.

      Best,
      Amine

      De: "Kevin Fengler" kevfengler@users.sf.net
      À: "[pb-jelly:discussion]" general@discussion.pb-jelly.p.re.sf.net
      Envoyé: Mardi 15 Novembre 2016 21:55:17
      Objet: [pb-jelly:discussion] corrected reads

      Can corrected PacBio reads be fed to PBJelly instead of raw reads?
      Seem like this would work better for gap filling.

      Thanks,
      KF

      corrected reads
      https://sourceforge.net/p/pb-jelly/discussion/general/thread/df8bb028/?limit=25#35f4

      Sent from sourceforge.net because you indicated interest in
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      --
      Mohamed Amine CHEBBI, PhD Student
      Université de Poitiers
      Laboratoire Ecologie et Biologie des Interactions - UMR CNRS 7267
      Equipe Ecologie Evolution Symbiose
      Bât. B8-B35 - 5 Rue Albert Turpin
      TSA 51106
      F-86022 Poitiers Cedex 9
      FRANCE
      Lab website: http://ecoevol.labo.univ-poitiers.fr/

       

    • Amine

      Amine - 2016-11-16

      Hi Kevin,

      Yes you can use corrected Pacbio reads for gap filling with PBJelly.

      Best,
      Amine

      De: "Kevin Fengler" kevfengler@users.sf.net
      À: "[pb-jelly:discussion]" general@discussion.pb-jelly.p.re.sf.net
      Envoyé: Mardi 15 Novembre 2016 21:55:17
      Objet: [pb-jelly:discussion] corrected reads

      Can corrected PacBio reads be fed to PBJelly instead of raw reads? Seem like this would work better for gap filling.

      Thanks,
      KF

      corrected reads

      Sent from sourceforge.net because you indicated interest in https://sourceforge.net/p/pb-jelly/discussion/general/

      To unsubscribe from further messages, please visit https://sourceforge.net/auth/subscriptions/

       

  • Amine

    Amine - 2016-11-16

    Hi Kevin,

    Yes you can use corrected Pacbio reads for gap filling with PBJelly.

    Best,
    Amine

     

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