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Output error in 'Collection.py'

2016-05-30
2016-05-31
  • Anthony Baniaga

    Anthony Baniaga - 2016-05-30

    Hi all,

    I am running PBJelly with PBSuite_15.8.24, and all is fine until I run the output command after the assembly step finishes:
    $bin/Jelly.py output protocol2.xml --debug

    2016-05-30 13:37:45,772 [INFO] Running bin/Jelly.py output protocol2.xml --debug
    2016-05-30 13:37:45,773 [INFO] Executing Stage: output
    2016-05-30 13:37:45,796 [DEBUG] CommandRunner Returned: [(1, '', None)]
    2016-05-30 13:37:45,796 [INFO] Finished Running Stage: output

    Inside the 'output.err' file it states:
    File "/home/abaniaga/build/PBSuite_15.8.24//bin//Collection.py", line 956
    bin/envt = int(b.split('.')[1][:-2])
    SyntaxError: can't assign to operator

    Can anyone help me get past this?

    Thanks in advance,
    Anthony

     
  • Adam English

    Adam English - 2016-05-31

    Could you run with --debug on and tell me what the line just before your error says? It'll have a structure similar to:

    Moving from %s to %s (p=%d)
    
     

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