How can I extract positions of filled regions relative to corrected assembly?
What I mean is that suppose I have a gap in my initial assembly, e.g from 1282 to 3157 and I want to know coordinates of sequence, inserted in my corrected assembly in stead of this gap. This sequences can be bigger or smaller than predicted gap size + corrdinates will be shifted because of other filled gaps. For example, In my case it can be sequence of length 200 and its new coordinates can be 1800-2000
How can I extract \ compute this information? So far just remap filled sequences to the corrected assembly, but it is not always what I want.
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
Hi!
How can I extract positions of filled regions relative to corrected assembly?
What I mean is that suppose I have a gap in my initial assembly, e.g from 1282 to 3157 and I want to know coordinates of sequence, inserted in my corrected assembly in stead of this gap. This sequences can be bigger or smaller than predicted gap size + corrdinates will be shifted because of other filled gaps. For example, In my case it can be sequence of length 200 and its new coordinates can be 1800-2000
How can I extract \ compute this information? So far just remap filled sequences to the corrected assembly, but it is not always what I want.