PBSuite v14.9.9

The big news is that PBJelly isn't as fussy about your networkx version. Hopefully this reduces the number of tickets... More importantly, PBJelly is more accurate than ever thanks to fixes to contig edge trimming AND better minRead functionality. PBHoney has better documentation and fewer bugs. Below is the information from the CHANGELOG

Jelly
general -
=Networkx v1.7 now supported!! We also hold support for v1.1 though
this is experimental. Please let me know if you see any bugs.
=Fixed docs/jellyExample/Protocol.xml (the blasr -bestn was incorrectly
set at 5)
=Added space support for Fasta/q headers. There shouldn't be much of a
problem if your headers have spaces.
Collection -
=Fixed a trimming bug that would occasionally take off more than
MAXTRIM bases
=Changed MAXTRIM to 100bp
=Added minRead support functionality - this works better now
=Changed logic structure for building FillMetrics (though this could
still be cleaner)
Assembly -
=Fixed bug that would occasionally allow inproper support during
assembly
Support -
=Cleaned up -h and added a little documentation to the code
summarizeAssembly -
=Even prettier output

Honey
general -
=Updated the docs to have a better description of the tails output
Force -
=Began extending/testing --bedPE Support
recallSpots -
=Fixed the code (again) so it should actually work
BPSpanner -
=Added experimental tool for genotyping SVs