Download
PathNER is a tool for the identification of specific pathway mentions from biomedical literature. PathNER is built upon the GATE embedded framework.It's based on soft dictionary matching and rules-based detection. The dictionary is generated from ConsensusPathDB and Pathway Ontology and the rules are implemented in JAPE. Using PathNER, you can identify all occurrences of informative pathway names (e.g. 'the Wnt pathway'). PathNER can be used to assist studies that aim at uncovering associations between disease and pathways.
The latest updates will be on GitHub : https://github.com/chengkun-wu/PathNER
License
Creative Commons Attribution Non-Commercial License V2.0Follow PathNER
Other Useful Business Software
One Monitoring Tool for IT, OT and Cloud | Free Trial
Modern infrastructure spans data centers, cloud platforms and factory floors, and every blind spot between them is a risk. PRTG supports SNMP, WMI, SSH and other standard protocols to monitor IT, OT and hybrid environments through one customizable dashboard. Build the views your team needs, from network health to application performance, without switching tools. Try PRTG free for 30 days now.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of PathNER!
