Recent changes to Home

Home modified by Derrick Fouts

Derrick Fouts — Fri, 04 Sep 2015 19:50:44 -0000

--- v9
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 [[project_admins]]

-PanOCT: Automated Clustering of Orthologs using Conserved Gene Neighborhood for Pan-Genomic Analysis of Bacterial Strains and Closely Related Species.  Derrick E. Fouts, Lauren Brinkac, Erin Beck, Jason Inman, and Granger Sutton.  Nucleic Acids Res 2012 40(2):e172.
-<http: www.ncbi.nlm.nih.gov="" pubmed="" 22904089="">
+PanOCT: Automated Clustering of Orthologs using Conserved Gene Neighborhood for Pan-Genomic Analysis of Bacterial Strains and Closely Related Species.  Derrick E. Fouts, Lauren Brinkac, Erin Beck, Jason Inman, and Granger Sutton.  [Nucleic Acids Res 2012 40(2):e172](http://nar.oxfordjournals.org/content/40/22/e172.full).

 **NEW Publication in Genome Biology featuring PanOCT for pan-chromosome consensus building was featured in "[This Week in Genome Biology](https://www.genomeweb.com/scan/week-genome-biology-8)":

-A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii.  Agnes P. Chan, Granger Sutton, Jessica DePew, Radha Krishnakumar, Yongwook Choi, Xiao-Zhe Huang, Erin Beck, Derek M. Harkins, Maria Kim, Emil P. Lesho, Mikeljon P. Nikolich and Derrick E. Fouts.  Genome Biol  2015 16(143):1-28.
+A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii.  Agnes P. Chan, Granger Sutton, Jessica DePew, Radha Krishnakumar, Yongwook Choi, Xiao-Zhe Huang, Erin Beck, Derek M. Harkins, Maria Kim, Emil P. Lesho, Mikeljon P. Nikolich and Derrick E. Fouts.  [Genome Biol 2015 16(143):1-28](http://www.genomebiology.com/2015/16/1/143/abstract).

 See Dr. Sutton's talk on PanOCT at The 13th Genomic Standards Consortium Meeting (GSC 13). Hosted by BGI and held at Kingkey Palace Hotel, Shenzhen, China, March 4-7, 2012:  <http: www.scivee.tv="" node="" 46402="">

Home modified by Derrick Fouts

Derrick Fouts — Fri, 04 Sep 2015 19:47:47 -0000

--- v8
+++ v9
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 [[project_admins]]

-PanOCT: Automated Clustering of Orthologs using Conserved Gene Neighborhood for Pan-Genomic Analysis of Bacterial Strains and Closely Related Species.  Derrick E. Fouts, Lauren Brinkac, Erin Beck, Jason Inman, and Granger Sutton.  Nucleic Acids Res 2012 Aug 16. Epub ahead of print.
+PanOCT: Automated Clustering of Orthologs using Conserved Gene Neighborhood for Pan-Genomic Analysis of Bacterial Strains and Closely Related Species.  Derrick E. Fouts, Lauren Brinkac, Erin Beck, Jason Inman, and Granger Sutton.  Nucleic Acids Res 2012 40(2):e172.
 <http: www.ncbi.nlm.nih.gov="" pubmed="" 22904089="">
+
+**NEW Publication in Genome Biology featuring PanOCT for pan-chromosome consensus building was featured in "[This Week in Genome Biology](https://www.genomeweb.com/scan/week-genome-biology-8)":
+
+A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii.  Agnes P. Chan, Granger Sutton, Jessica DePew, Radha Krishnakumar, Yongwook Choi, Xiao-Zhe Huang, Erin Beck, Derek M. Harkins, Maria Kim, Emil P. Lesho, Mikeljon P. Nikolich and Derrick E. Fouts.  Genome Biol  2015 16(143):1-28.

 See Dr. Sutton's talk on PanOCT at The 13th Genomic Standards Consortium Meeting (GSC 13). Hosted by BGI and held at Kingkey Palace Hotel, Shenzhen, China, March 4-7, 2012:  <http: www.scivee.tv="" node="" 46402="">

WikiPage Home modified by Derrick Fouts

Derrick Fouts — Tue, 06 Nov 2012 17:04:37 -0000

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 *Note:  This is only meant as a guide.  Performance may very.  Results not guaranteed.
 
-Please see the Wiki to download the supplemental files from the paper.
+**Please see the Wiki to download the supplemental files from the paper.
         
 [[download_button]]

WikiPage Home modified by Derrick Fouts

Derrick Fouts — Tue, 06 Nov 2012 17:04:20 -0000

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 14 GB RAM | 1-25
 
 *Note:  This is only meant as a guide.  Performance may very.  Results not guaranteed.
+
+Please see the Wiki to download the supplemental files from the paper.
         
 [[download_button]]

WikiPage Home modified by Derrick Fouts

Derrick Fouts — Tue, 18 Sep 2012 02:16:29 -0000

--- v5
+++ v6
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 [[project_admins]]
 
-PanOCT: Automated Clustering of Orthologs using Conserved Gene Neighborhood for Pan-Genomic Analysis of Bacterial Strains and Closely Related Species.  Derrick E. Fouts, Lauren Brinkac, Erin Beck, Jason Inman, and Granger Sutton.  Nucleic Acids Res 2012 Aug 16. [Epub ahead of print].
+PanOCT: Automated Clustering of Orthologs using Conserved Gene Neighborhood for Pan-Genomic Analysis of Bacterial Strains and Closely Related Species.  Derrick E. Fouts, Lauren Brinkac, Erin Beck, Jason Inman, and Granger Sutton.  Nucleic Acids Res 2012 Aug 16. Epub ahead of print.
 
 
 See Dr. Sutton's talk on PanOCT at The 13th Genomic Standards Consortium Meeting (GSC 13). Hosted by BGI and held at Kingkey Palace Hotel, Shenzhen, China, March 4-7, 2012:

WikiPage Home modified by Derrick Fouts

Derrick Fouts — Tue, 18 Sep 2012 02:06:23 -0000

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 PanOCT: Automated Clustering of Orthologs using Conserved Gene Neighborhood for Pan-Genomic Analysis of Bacterial Strains and Closely Related Species.  Derrick E. Fouts, Lauren Brinkac, Erin Beck, Jason Inman, and Granger Sutton.  Nucleic Acids Res 2012 Aug 16. [Epub ahead of print].
 
 
-See Dr. Sutton's talk on PanOCT at The 13th Genomic Standards Consortium Meeting (GSC 13). Hosted by BGI and held at Kingkey Palace Hotel, Shenzhen, China, March 4-7, 2012
-
-
+See Dr. Sutton's talk on PanOCT at The 13th Genomic Standards Consortium Meeting (GSC 13). Hosted by BGI and held at Kingkey Palace Hotel, Shenzhen, China, March 4-7, 2012:  
 
 Memory usage guide (based on 4 Mbp bacterial genomes)

WikiPage Home modified by Derrick Fouts

Derrick Fouts — Tue, 18 Sep 2012 02:05:29 -0000

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+++ v4
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 [[project_admins]]
 
-PanOCT: Automated Clustering of Orthologs using Conserved Gene Neighborhood for Pan-Genomic Analysis of Bacterial Strains and Closely Related Species.  Derrick E. Fouts, Lauren Brinkac, Erin Beck, Jason Inman, and Granger Sutton (2011).  Nucleic Acids Res submitted for review.
+PanOCT: Automated Clustering of Orthologs using Conserved Gene Neighborhood for Pan-Genomic Analysis of Bacterial Strains and Closely Related Species.  Derrick E. Fouts, Lauren Brinkac, Erin Beck, Jason Inman, and Granger Sutton.  Nucleic Acids Res 2012 Aug 16. [Epub ahead of print].
+
+
+See Dr. Sutton's talk on PanOCT at The 13th Genomic Standards Consortium Meeting (GSC 13). Hosted by BGI and held at Kingkey Palace Hotel, Shenzhen, China, March 4-7, 2012
+
+
 
 Memory usage guide (based on 4 Mbp bacterial genomes)

WikiPage Home modified by Derrick Fouts

Derrick Fouts — Thu, 17 Nov 2011 14:38:59 -0000

--- v2 
+++ v3 
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 [[project_admins]]
 
 PanOCT: Automated Clustering of Orthologs using Conserved Gene Neighborhood for Pan-Genomic Analysis of Bacterial Strains and Closely Related Species.  Derrick E. Fouts, Lauren Brinkac, Erin Beck, Jason Inman, and Granger Sutton (2011).  Nucleic Acids Res submitted for review.
+
+Memory usage guide (based on 4 Mbp bacterial genomes)
+
+Memory    | # genomes
+--------- | ---------
+1 GB RAM  | 1-5
+2 GB RAM  | 1-8
+4 GB RAM  | 1-12
+8 GB RAM  | 1-18
+14 GB RAM | 1-25
+
+*Note:  This is only meant as a guide.  Performance may very.  Results not guaranteed.
+        
 [[download_button]]

WikiPage Home modified by Derrick Fouts

Derrick Fouts — Thu, 17 Nov 2011 14:33:19 -0000

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-Welcome to your wiki!
-
-This is the default page, edit it as you see fit. To add a page simply reference it within brackets, e.g.: [SamplePage].
-
-The wiki uses [Markdown](/p/panoct/home/markdown_syntax/) syntax.
+[[project_admins]]
+
+PanOCT: Automated Clustering of Orthologs using Conserved Gene Neighborhood for Pan-Genomic Analysis of Bacterial Strains and Closely Related Species.  Derrick E. Fouts, Lauren Brinkac, Erin Beck, Jason Inman, and Granger Sutton (2011).  Nucleic Acids Res submitted for review.
+[[download_button]]

WikiPage Home modified by Derrick Fouts

Derrick Fouts — Wed, 26 Oct 2011 20:57:05 -0000

Welcome to your wiki! This is the default page, edit it as you see fit. To add a page simply reference it within brackets, e.g.: [SamplePage]. The wiki uses [Markdown](/p/panoct/home/markdown_syntax/) syntax.