PANDA Activity
A comprehensive and flexible quantification tool for proteomics data
Status: Beta
Brought to you by:
carlos-chang
Activity for PANDA
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PANDA released /PANDA_x64_v1.2.7.zip
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BPRC-Bioinformatics posted a comment on discussion General Discussion
Hi, Thank you so much for the feedback:) It was because I assumed the users should use the absolute path of the input file, rather than the file name of the input file. In your case, the correct command line should be : pFindSplit.exe W:\pFind\Data\EischenC\20-L014\Combined\result\pFind.protein (The input file pFind.protein should include its path, rather than the file name only) Now, I have updated the tool pFindSplit to add a new parameter "output foler" to avoid this bug. You can use the latest...
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Hsin Tang posted a comment on discussion General Discussion
Hi, I tried the split tool, but unfortunately it did not work for me. Below is the error: W:\pFind\Data\EischenC\20-L014\Combined\result>pFindSplit.exe pFind.protein Loading the protein file from pFind results: pFind.protein Cannot find the right folder path from the input file! 0 files are split from the input filethe total time of pFindSplit is 0.00s. Any help is appreciated. Thanks.
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Dear users, Thank you for using PANDA and PANDA-view. I have just released the new version of PANDA v1.1.7. The main features are as follows. (1) supporting pFind3, pGlyco2 and providing the tool "pFindSplit" to split the merged result files of pFind3 and pGlyco2 before running PANDA. (2) updating the PSI-MS-CV to support the new version of mzIdentML exported from Mascot v2.7. Next, I plan to support Percolator and other tools. Any suggestion is welcome:) Best regards, Cheng.
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Thank you! I will test it out and let you know if I encounter any problem. From: BPRC-Bioinformatics carlos-chang@users.sourceforge.net Sent: Monday, May 11, 2020 11:41 PM To: [panda-tools:discussion] general@discussion.panda-tools.p.re.sourceforge.net Subject: [panda-tools:discussion] Tool to split merged result files from pFind Hi, I just upload the split tool for pFind3 and pGlyco2, you can find it in the PANDA website or in the attachment. The pFindSplit tool only runs in CMD. The command is...
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Hi, I just upload the split tool for pFind3 and pGlyco2, you can find it in the PANDA website or in the attachment. The pFindSplit tool only runs in CMD. The command is easy: pFindSplit.exe c:\test\test.protein or test.filtered.spectra.
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Thank you. Eagerly looking forward to it. Stay safe.
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Hi, sorry for the late reply. The split tool is already done but recently I have to work at home due to the pandemics. So I plan to take some extra time to rewrite the code and upload to SourceForge by the end of this month. Thank you for using PANDA and PANDA-view.
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Hello, I am interested in using PANDA to analyze pFind results. The readme describes a tool to split pFind results where all raw files were searched together. I am wondering if the tool is already available? Thank you!
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