Re: [OWLAPI-developer] Problem with getting Annotation

[Ignazio P. <ipa...@gm...>]

2011/6/29 An C. Tran <tca...@gm...>:
> Hi Ignazio,
>
> Your code work fine with the previous Ontology but it does not work for
> attached ontology.
> Would you like to help me with this. I am creating a simpler ontology for
> testing.
> Unfortunately, no annotation comes along with axiom for which the
> annotations was assigned but
> they appeared as separate axioms.

All the labels I can see are attached to classes not to axioms -
that's probably why.
HTH,
I.

>
> Thanks,
> An.
>
> On 6/27/2011 9:06 PM, Ignazio Palmisano wrote:
>>
>> 2011/6/27 An C. Tran<tca...@gm...>:
>>>
>>> Hi all,
>>>
>>> Someone can help me with this:
>>>
>>> In my example, given an "OWLAxiom eq" is an EquivalentClass, the
>>> following
>>> segment of code:
>>>              System.out.println("\n***" + eq.getAxiomType() + ":");
>>>              System.out.println("Annotation: " + eq.getAnnotations());
>>>              System.out.println(renderer.render(eq));
>>>
>> Hi,
>> I tried your code (with some changes to remove calls to Pellet) with
>> the latest OWL API and I get this output:
>>
>> Reading file
>> file:///Users/ignazio/Downloads/abd.muse.massey.ac.nz.owl...Ontology
>> loaded
>>
>> ***EquivalentClasses:
>> Annotation: [Annotation(rdfs:label
>> "DurationAbnormality_Showering"^^xsd:string)]
>> DurationAbnormality EquivalentTo Showering and (activityHasDuration some
>> (Duration and ((hasDurationValue some double[>  15]) or
>> (hasDurationValue some double[<  5])))) and (activityHasStarttime some
>> Winter)
>>
>> ***EquivalentClasses:
>> Annotation: [Annotation(rdfs:label
>> "DurationAbnormality_Toileting"^^xsd:string)]
>> DurationAbnormality EquivalentTo Toileting and (activityHasDuration some
>> (Duration and (hasDurationValue some double[>  15])))
>>
>> ***EquivalentClasses:
>> Annotation: [Annotation(rdfs:label "EquivalentWinter_Ann")]
>> Winter EquivalentTo Timepoint and (hasMonthValue some double[>= 5])
>> and (hasMonthValue some double[<= 8])
>>
>>
>> for this code:
>>
>> public class Explanation_EquiClass_Lite {
>>        private static final String file =
>> "file:///Users/ignazio/Downloads/abd.muse.massey.ac.nz.owl";
>>        private static OWLObjectRenderer renderer = new
>> ManchesterOWLSyntaxOWLObjectRendererImpl(); //new
>> DLSyntaxObjectRenderer();
>>
>>        public static void main(String[] args) throws Exception {
>>                System.out.print("Reading file " + file + "...");
>>                OWLOntologyManager manager =
>> OWLManager.createOWLOntologyManager();
>>                OWLOntology ontology =
>> manager.loadOntology(IRI.create(file));
>>                OWLDataFactory factory = manager.getOWLDataFactory();
>>                System.out.println("Ontology loaded");
>>                OWLAnnotationProperty label = factory.getRDFSLabel();
>>                for (OWLAxiom e : ontology.getAxioms()) {
>>                        Set<OWLAnnotation>  labels =
>> e.getAnnotations(label);
>>                        if (labels.size()>  0) {
>>                                System.out.println("\n***" +
>> e.getAxiomType() + ":");
>>                                System.out.println("Annotation: " +
>> labels);
>>                                System.out.println(renderer.render(e));
>>                        }
>>                }
>>        }
>> }
>>
>>
>> I assume you're using Pellet 2.2.2 and the OWL API which ships with
>> it, which is from March 2010 IIRC. There might be bugs in that version
>> of the OWL API, or Pellet might be returning the axioms stripped of
>> the annotations. You can try Pellet with the latest release (3.2.3),
>> if the bug is in the OWL API that should fix it.
>> HTH,
>> I.
>>
>>> produces the following result:
>>>       ***EquivalentClasses:
>>>       Annotation: []
>>>       DurationAbnormality EquivalentTo Showering and ......
>>>
>>> The annotation is always empty while I assigned annotation for this
>>> EquivalentClass before.
>>> However, it runs well for classes.
>>>
>>> I attached my ontology and java code for your checking.
>>>
>>>
>>> Cheers,
>>> An.
>>>
>>>
>>>
>>>
>>>
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>>>
>>
>> ------------------------------------------------------------------------------
>> All of the data generated in your IT infrastructure is seriously valuable.
>> Why? It contains a definitive record of application performance, security
>> threats, fraudulent activity, and more. Splunk takes this data and makes
>> sense of it. IT sense. And common sense.
>> http://p.sf.net/sfu/splunk-d2d-c2
>> _______________________________________________
>> Owlapi-developer mailing list
>> Owl...@li...
>> https://lists.sourceforge.net/lists/listinfo/owlapi-developer
>
>
> ------------------------------------------------------------------------------
> All of the data generated in your IT infrastructure is seriously valuable.
> Why? It contains a definitive record of application performance, security
> threats, fraudulent activity, and more. Splunk takes this data and makes
> sense of it. IT sense. And common sense.
> http://p.sf.net/sfu/splunk-d2d-c2
> _______________________________________________
> Owlapi-developer mailing list
> Owl...@li...
> https://lists.sourceforge.net/lists/listinfo/owlapi-developer
>
>