I have installed Xfree86 4.2.0 for QNX6 and started startx.
For installing QT, i have downloaded and untared QTX for QNX6( qt-x11-free-3.1.0-2-qnx6-bin.tar.gz) version.
The uninstalled dir deos not contain configure file for configuring QT on QNX as it is written in README.QNX file
I believe the README.QNX is for you if you decide to compile the source code yourself. Since you downloaded the binary, there is no need.
You might want to check the mailing list archive and post your questions there. Most developers are on that mailing list:
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