[OpenBabel-Devel] Problem with fingerprint screened substructure search

[Tim V. <tim...@gm...>]

Hi,

I've created a fastsearch index using the FP2, FP3, FP4 & MACCS
fingerprints. When I do a substructure search without fingerprints (in
a 10K file), I get 647 hits. With FP2 I also get these hits. However
with the other fingerprints I get more hits. These hits include
molecules that do not have my query as substructure. It seems like no
substructure search is done for the other fingerprints. This is using
svn. Any ideas?

Tim