[OpenBabel-scripting] [openbabel-scripting] Using Fingerprinter with perl

[Matt K. <mke...@iu...>]

I am somewhat confused on how to obtain fingerprints using perl.  I tried
doing a simple SetInAndOutFormats("smi","fpt") and then write the molecule
out but got a segmentation fault, while it worked for other formats such as
smiles to molfile.  I am also unfamiliar with using the
OBConversion.convert() function, as it complained that input and output was
not set.

I know that pybel is available and could use that although I am already
using perl to parse pubchem data into a flat file before it goes into my
postgresql database and would like to calculate fingerprints from the smiles
of each line on the fly before it goes in.
Thanks for any help.
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