Re: [OpenBabel-scripting] OBDotNet 0.2

[Matt S. <mes...@gm...>]

The names of some classes have been changed in V.2 to follow standard C# naming conventions. No further changes will be made to class names.

Renamed Classes:

atomreftype -> AtomRefType
errorQualifier -> ErrorQualifier
obMessageLevel -> OBMessageLevel
vectorBond -> VectorBond
vectorDouble -> VectorDouble
vectorInt -> VectorInt
vectorMol -> VectorMol
vectorOBVector3 -> VectorOBVector3
vectorpAtom -> VectorpAtom
vectorpBond -> VectorpBond
vectorpData -> VectorpData
vectorpInternalCoord -> VectorpInternalCoord
vectorpRing -> VectorpRing
vectorResidue -> VectorResidue
vectorRing -> VectorRing
vectorString -> VectorString


New Types:

CByteArray
CDoubleArray
CIntArray
CUIntArray
OBGenericDataType
OBNasaThermoData
OBRateData
OBRotamerList
OBRotor
OBRotorKeys
OBRotorList
OBRotorRule
OBRotorRules
openbabelcsharp
Rate_Type
Reaction_Type
SWIGTYPE_p_std__vectorT_double_t__iterator
SWIGTYPE_p_std__vectorT_unsigned_char_p_t__iterator
VectorOBExternalBond
VectorpRotor
VectorTorsion
VectorUInt
VectorUShort
VectorVecDouble
VectorVecInt
VectorVecOBVector3
VectorVecUInt



Version 0.3 Goals
-Implement reference equality comparison.
 
-Improve C style array proxies by implementing some type of support from enumeration.
 This will require customizing the wrapper defined in carrays.i.
 
-Determine whether or not to implement standard C#/PInvoke array marshaling.
	-Pros: Converting to C# arrays simplifies creating arrays
	-Cons: The arrays being marshaled to C# are copies
               rather than references to an unmanaged array.
 
-Streams: Either build a wrapper or add methods that redirect standard in/out.

-Get FastSearch working or implement equivalent functionality in DotBabel. Stream wrappers are the main barrier. 

-Develop workaround or complete the typemaps for std::map, std::pair, and std::triple.
 OBTorsion will not be fully functional until this is done.

-Get proxy for shared_ptr working so that reaction.h can added.
	-The macro define at line 29 of reaction.h "#define shared_ptr boost::shared_ptr"
         causes namespace problems in the generated C++ wrapper

-Resolve std::string wrapper issues. Some strings are not mapping correctly.

-Fix VectorpData GC bug.


DotBabel goals:
-XML serialization of OB objects	`