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[OpenBabel-scripting] Python BIndings
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From: Sam A. <ter...@ya...> - 2006-10-22 05:20:37
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I have the latest version of Openbabel (SVN)
installed. Then i proceeded to install the Python
bindings and everything went berzerk.
WARNING: Environment variable OPENBABEL_INSTALL is not
set
INFO: Looking for library and include files in
../../src
running build
running build_py
creating build
creating build/lib.linux-i686-2.4
copying openbabel.py -> build/lib.linux-i686-2.4
copying pyopenbabel.py -> build/lib.linux-i686-2.4
running build_ext
building '_openbabel' extension
creating build/temp.linux-i686-2.4
gcc -pthread -fno-strict-aliasing -DNDEBUG -g -O3
-Wall -Wstrict-prototypes -fPIC -I../../src
-I/usr/include/python2.4 -c openbabel_python.cpp -o
build/temp.linux-i686-2.4/openbabel_python.o
cc1plus: warning: command line option
"-Wstrict-prototypes" is valid for Ada/C/ObjC but not
for C++
openbabel_python.cpp: In function PyObject*
_wrap_OBMol_CreateResidue(PyObject*, PyObject*):
openbabel_python.cpp:38606: error: OBResidue was not
declared in this scope
openbabel_python.cpp:38606: error: result was not
declared in this scope
openbabel_python.cpp:38617: error: expected
primary-expression before ) token
openbabel_python.cpp: In function PyObject*
_wrap_OBMol_DestroyResidue(PyObject*, PyObject*):
openbabel_python.cpp:38688: error: OBResidue was not
declared in this scope
openbabel_python.cpp:38688: error: arg2 was not
declared in this scope
openbabel_python.cpp:38688: error: expected
primary-expression before ) token
openbabel_python.cpp:38688: error: expected `;' before
numeric constant
openbabel_python.cpp:38706: error: expected
type-specifier before OBResidue
openbabel_python.cpp:38706: error: expected `>' before
OBResidue
openbabel_python.cpp:38706: error: expected `(' before
OBResidue
openbabel_python.cpp:38706: error: expected
primary-expression before > token
openbabel_python.cpp:38706: error: expected `)' before
; token
openbabel_python.cpp: In function PyObject*
_wrap_OBMol_AddResidue(PyObject*, PyObject*):
openbabel_python.cpp:39090: error: OBResidue was not
declared in this scope
openbabel_python.cpp:39090: error: arg2 was not
declared in this scope
openbabel_python.cpp:39112: error: expected
type-specifier before OBResidue
openbabel_python.cpp:39112: error: expected `>' before
OBResidue
openbabel_python.cpp:39112: error: expected `(' before
OBResidue
openbabel_python.cpp:39112: error: expected
primary-expression before > token
openbabel_python.cpp:39112: error: expected `)' before
; token
openbabel_python.cpp: In function PyObject*
_wrap_OBMol_DeleteResidue(PyObject*, PyObject*):
openbabel_python.cpp:39220: error: OBResidue was not
declared in this scope
openbabel_python.cpp:39220: error: arg2 was not
declared in this scope
openbabel_python.cpp:39220: error: expected
primary-expression before ) token
openbabel_python.cpp:39220: error: expected `;' before
numeric constant
openbabel_python.cpp:39239: error: expected
type-specifier before OBResidue
openbabel_python.cpp:39239: error: expected `>' before
OBResidue
openbabel_python.cpp:39239: error: expected `(' before
OBResidue
openbabel_python.cpp:39239: error: expected
primary-expression before > token
openbabel_python.cpp:39239: error: expected `)' before
; token
openbabel_python.cpp: In function PyObject*
_wrap_OBMol_NewResidue(PyObject*, PyObject*):
openbabel_python.cpp:39273: error: OBResidue was not
declared in this scope
openbabel_python.cpp:39273: error: result was not
declared in this scope
openbabel_python.cpp:39284: error: expected
primary-expression before ) token
openbabel_python.cpp: In function PyObject*
_wrap_OBMol_GetResidue(PyObject*, PyObject*):
openbabel_python.cpp:39863: error: OBResidue was not
declared in this scope
openbabel_python.cpp:39863: error: result was not
declared in this scope
openbabel_python.cpp:39882: error: expected
primary-expression before ) token
openbabel_python.cpp: In function PyObject*
_wrap_OBMol_BeginResidue(PyObject*, PyObject*):
openbabel_python.cpp:43939: error: OBResidue was not
declared in this scope
openbabel_python.cpp:43939: error: OBResidue cannot
appear in a constant-expression
openbabel_python.cpp:43939: error: template argument 1
is invalid
openbabel_python.cpp:43939: error: template argument 1
is invalid
openbabel_python.cpp:43939: error: template argument 2
is invalid
openbabel_python.cpp:43939: error: expected
initializer before * token
openbabel_python.cpp:43940: error: result was not
declared in this scope
openbabel_python.cpp:43961: error: arg2 was not
declared in this scope
openbabel_python.cpp:43961: error: OBResidue cannot
appear in a constant-expression
openbabel_python.cpp:43961: error: OBResidue cannot
appear in a constant-expression
openbabel_python.cpp:43961: error: template argument 1
is invalid
openbabel_python.cpp:43961: error: template argument 1
is invalid
openbabel_python.cpp:43961: error: template argument 2
is invalid
openbabel_python.cpp:43961: error: expected `>' before
:: token
openbabel_python.cpp:43961: error: expected `(' before
:: token
openbabel_python.cpp:43961: error: ::iterator has
not been declared
openbabel_python.cpp:43961: error: expected
primary-expression before > token
openbabel_python.cpp:43961: error: expected `)' before
; token
openbabel_python.cpp:43962: error: expected
primary-expression before ) token
openbabel_python.cpp: In function PyObject*
_wrap_OBMol_NextResidue(PyObject*, PyObject*):
openbabel_python.cpp:43973: error: OBResidue was not
declared in this scope
openbabel_python.cpp:43973: error: OBResidue cannot
appear in a constant-expression
openbabel_python.cpp:43973: error: template argument 1
is invalid
openbabel_python.cpp:43973: error: template argument 1
is invalid
openbabel_python.cpp:43973: error: template argument 2
is invalid
openbabel_python.cpp:43973: error: expected
initializer before * token
openbabel_python.cpp:43974: error: result was not
declared in this scope
openbabel_python.cpp:43995: error: arg2 was not
declared in this scope
openbabel_python.cpp:43995: error: OBResidue cannot
appear in a constant-expression
openbabel_python.cpp:43995: error: OBResidue cannot
appear in a constant-expression
openbabel_python.cpp:43995: error: template argument 1
is invalid
openbabel_python.cpp:43995: error: template argument 1
is invalid
openbabel_python.cpp:43995: error: template argument 2
is invalid
openbabel_python.cpp:43995: error: expected `>' before
:: token
openbabel_python.cpp:43995: error: expected `(' before
:: token
openbabel_python.cpp:43995: error: ::iterator has
not been declared
openbabel_python.cpp:43995: error: expected
primary-expression before > token
openbabel_python.cpp:43995: error: expected `)' before
; token
openbabel_python.cpp:43996: error: expected
primary-expression before ) token
../../src/residue.h: At global scope:
../../src/residue.h:305: warning: OpenBabel::Residue
defined but not used
../../src/residue.h:348: warning:
OpenBabel::ElemDesc defined but not used
../../src/residue.h:380: warning: OpenBabel::ResNo
defined but not used
../../src/residue.h:381: warning: OpenBabel::ElemNo
defined but not used
error: command 'gcc' failed with exit status 1
Please tell me how to fix this.
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