Re: [OpenBabel-scripting] dl module error

[Noel O'B. <bao...@gm...>]

Unfortunately, I don't really know what's going on.

However, it may help others if you can show the very *first* error messages
you get when you run "python setup.py build", because these are likely to be
the main problem. All of the other errors happen because of the main
problem. Please check on the web for how to pipe standard output *and*
standard error to the same file for your shell. In "bash", you use ">&
mybuild.out"

Noel

On 06/10/06, Ahmet Bakan <ah...@pi...> wrote:
>
> I thought my reply was to all, excuse me.
> Babel itself is working.  I installed it as the root.  I have attached
> output for "python setup.py build".  I could not catch all of the output
> in a file.  I have copied last part of the errors and inserted them to the
> end.  The part I couldn't catch is similar to the part in the file.
> Thanks a lot!
> Regards,
> Ahmet
>
> On 10/6/06, Noel O'Boyle <bao...@gm...> wrote:
> >
> > First of all, please send all email to the mailing list. You can 'cc' it
> > to me if you wish, but there are others on the mailing list who will be able
> > to help you more than I can. I have attached the .out files you have sent me
> > to this email.
> >
> > Well, there's nothing obviously wrong to me. I note that you are using a
> > 64-bit system, though. There's a couple more questions which might help us
> > to help you...
> >
> > Does Babel itself work? That is, does the output of "babel -H" list all
> > of the different file formats?
> >
> > Did you install Open Babel globally as root? That is, did you run "make
> > install" as root as described on:
> >     http://openbabel.sourceforge.net/wiki/Install
> >
> > Could you also attach the complete output (errors and all) from "python
> > setup.py build"? (You can catch it using "python setup.py build |&
> > pythonbuild.out")
> >
> > Regards,
> >    Noel
> >
> > On 06/10/06, Ahmet Bakan <ah...@pi...> wrote:
> > >
> > > I am building the latest version 2.0.2.
> > > I have attached configure and make output files.
> > > Thank you very much for your attention.
> > > Regards,
> > > Ahmet
> > >
> > > On 10/6/06, Noel O'Boyle <bao...@gm...> wrote:
> > > >
> > > > What version of OpenBabel are you building?
> > > >
> > > > Can you send configure.out and make.out to this mailing list? The
> > > > problem may be with the OpenBabel compilation, rather than the Python
> > > > wrapper.
> > > >
> > > > (See the instructions at
> > > > http://openbabel.sourceforge.net/wiki/Install on how to create
> > > > configure.out and make.out .)
> > > >
> > > > Regards,
> > > >    Noel
> > > >
> > > > On 06/10/06, Ahmet Bakan <ah...@pi...> wrote:
> > > >
> > > > >  Hi All,
> > > > >
> > > > > I have followed the instructions to install Python wrapper for
> > > > > OpenBabel on Linux.  I have had an error or a warning on every line as I was
> > > > > running the provided setup.py code.
> > > > > Also after the build and install finished I could not import
> > > > > openbabel module due "ImportError: No module named dl".
> > > > > The errors on build and installation is as follows:
> > > > > openbabel_python.cpp:46242: error: `OpenBabel' has not been
> > > > > declared
> > > > > openbabel_python.cpp:46242: error: `OUTOPTIONS' was not declared
> > > > > in this scope
> > > > >
> > > > > If you can figure out that I am missing something, can you please
> > > > > let me know?
> > > > > I use
> > > > > Python 2.4.3
> > > > > [GCC 3.4.5 20051201 (Red Hat 3.4.5-2)] on linux2
> > > > >
> > > > > Thanks in advance.
> > > > > Ahmet
> > > > >
> > > > > --
> > > > > Ahmet Bakan
> > > > > Department of Computational Biology
> > > > > University of Pittsburgh School of Medicine
> > > > > 3501 Fifth Avenue
> > > > > Suite 3064 BST3
> > > > > Pittsburgh, PA  15213-3301
> > > > >
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> > >
> > >
> > > --
> > > Ahmet Bakan
> > > Department of Computational Biology
> > > University of Pittsburgh School of Medicine
> > > 3501 Fifth Avenue
> > > Suite 3064 BST3
> > > Pittsburgh, PA  15213-3301
> > >
> > >
> >
> >
>
>
> --
> Ahmet Bakan
> Department of Computational Biology
> University of Pittsburgh School of Medicine
> 3501 Fifth Avenue
> Suite 3064 BST3
> Pittsburgh, PA  15213-3301
>
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