Re: [OpenBabel-scripting] Graph Kernels

[Noel O'B. <noe...@ma...>]

I think you are getting your wires crossed. The Python interface to
OpenBabel is simply called the openbabel module. The pyopenbabel module
is a wrapper around this, which although described on the web site (see
Geoff's links below) is not included with the current version of
OpenBabel.

So, I think your question is: how do I use the DFS in OpenBabel?
Unfortunately, the answer appears to be the same, as shown in this quote
from Geoff's earlier email:

> There are both DFS and BFS iterators in the 2.1 development code,  
> which incidentally is the only version with PyOpenBabel.

So, DFS is not currently in OpenBabel. However, this does not stop you
from writing one yourself if you are familiar with recursion. Otherwise,
I'm afraid that you will have to wait until OpenBabel 2.1 is released,
or else install the development version.

Regards,
  Noel

On Tue, 2006-08-29 at 21:04 -0400, Geoffrey Hutchison wrote:
> On Aug 29, 2006, at 12:31 PM, priyashree saxena wrote:
> 
> > Could you please tell me how exactly I could use DFS thats there in  
> > pyopenbabel. Or it would be great if you could direct me to the  
> > part of documentation which shows the syntax or the parameters that  
> > should be passed to DFS. Also could you also direct me to the  
> > documentation of pyopenbabel so that I know the functionalities I  
> > can make use in my code.
> 
> Well, I didn't write pyopenbabel and the only documentation that I  
> know is:
> http://openbabel.sourceforge.net/wiki/Python#The_pyopenbabel_module
> http://openbabel.sourceforge.net/pyopenbabel.html
> 
> I don't know how recent this is, so I don't know if it includes DFS  
> support. The openbabel python interface should.
> 
> Cheers,
> -Geoff
> 
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