Re: [openbabel-scripting] Re: "did not load properly"

[Noel O'B. <no...@ca...>]

Done. Same problem as in Python, it seems.


$ perl Makefile.PL; make; make test

Checking if your kit is complete...
Warning: the following files are missing in your kit:
        openbabel.pm
Please inform the author.
Writing Makefile for Chemistry::OpenBabel
cp OpenBabel.pm blib/lib/Chemistry/OpenBabel.pm
g++ -c  -I../../src -D_REENTRANT -D_GNU_SOURCE -DTHREADS_HAVE_PIDS
-DDEBIAN -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE
-D_FILE_OFFSET_BITS=64 -O2   -DVERSION=\"1.0.0\" -DXS_VERSION=\"1.0.0\"
-fPIC "-I/usr/lib/perl/5.8/CORE"   openbabel_perl.cpp
Running Mkbootstrap for Chemistry::OpenBabel ()
chmod 644 OpenBabel.bs
rm -f blib/arch/auto/Chemistry/OpenBabel/OpenBabel.so
LD_RUN_PATH="" g++  -shared -L/usr/local/lib
openbabel_perl.o ../../src/.libs/libopenbabel.a -lz  -o
blib/arch/auto/Chemistry/OpenBabel/OpenBabel.so
chmod 755 blib/arch/auto/Chemistry/OpenBabel/OpenBabel.so
cp OpenBabel.bs blib/arch/auto/Chemistry/OpenBabel/OpenBabel.bs
chmod 644 blib/arch/auto/Chemistry/OpenBabel/OpenBabel.bs
PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e"
"test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/example..../usr/local/lib/openbabel/APIInterface.so did not load
properly
/usr/local/lib/openbabel/CSRformat.so did not load properly
/usr/local/lib/openbabel/PQSformat.so did not load properly
/usr/local/lib/openbabel/alchemyformat.so did not load properly
/usr/local/lib/openbabel/amberformat.so did not load properly
/usr/local/lib/openbabel/balstformat.so did not load properly
/usr/local/lib/openbabel/bgfformat.so did not load properly
t/example....ok 5/11/usr/local/lib/openbabel/boxformat.so did not load
properly
/usr/local/lib/openbabel/cacaoformat.so did not load properly
/usr/local/lib/openbabel/cacheformat.so did not load properly
/usr/local/lib/openbabel/carformat.so did not load properly
/usr/local/lib/openbabel/cccformat.so did not load properly
/usr/local/lib/openbabel/chem3dformat.so did not load properly
/usr/local/lib/openbabel/chemdrawformat.so did not load properly
/usr/local/lib/openbabel/chemtoolformat.so did not load properly
/usr/local/lib/openbabel/copyformat.so did not load properly
/usr/local/lib/openbabel/crkformat.so did not load properly
/usr/local/lib/openbabel/cssrformat.so did not load properly
/usr/local/lib/openbabel/dmolformat.so did not load properly
/usr/local/lib/openbabel/fastsearchformat.so did not load properly
/usr/local/lib/openbabel/featformat.so did not load properly
/usr/local/lib/openbabel/fhformat.so did not load properly
/usr/local/lib/openbabel/fingerprintformat.so did not load properly
/usr/local/lib/openbabel/freefracformat.so did not load properly
/usr/local/lib/openbabel/gamessformat.so did not load properly
/usr/local/lib/openbabel/gaussformat.so did not load properly
/usr/local/lib/openbabel/ghemicalformat.so did not load properly
/usr/local/lib/openbabel/gromos96format.so did not load properly
/usr/local/lib/openbabel/hinformat.so did not load properly
/usr/local/lib/openbabel/inchiformat.so did not load properly
/usr/local/lib/openbabel/jaguarformat.so did not load properly
/usr/local/lib/openbabel/mdlformat.so did not load properly
/usr/local/lib/openbabel/mmodformat.so did not load properly
/usr/local/lib/openbabel/mpdformat.so did not load properly
/usr/local/lib/openbabel/mol2format.so did not load properly
/usr/local/lib/openbabel/mopacformat.so did not load properly
/usr/local/lib/openbabel/mpqcformat.so did not load properly
/usr/local/lib/openbabel/nwchemformat.so did not load properly
/usr/local/lib/openbabel/pcmodelformat.so did not load properly
/usr/local/lib/openbabel/pdbformat.so did not load properly
/usr/local/lib/openbabel/povrayformat.so did not load properly
/usr/local/lib/openbabel/qchemformat.so did not load properly
/usr/local/lib/openbabel/reportformat.so did not load properly
/usr/local/lib/openbabel/rxnformat.so did not load properly
/usr/local/lib/openbabel/shelxformat.so did not load properly
/usr/local/lib/openbabel/smilesformat.so did not load properly
/usr/local/lib/openbabel/tinkerformat.so did not load properly
/usr/local/lib/openbabel/turbomoleformat.so did not load properly
/usr/local/lib/openbabel/unichemformat.so did not load properly
/usr/local/lib/openbabel/viewmolformat.so did not load properly
/usr/local/lib/openbabel/xedformat.so did not load properly
/usr/local/lib/openbabel/xyzformat.so did not load properly
/usr/local/lib/openbabel/yasaraformat.so did not load properly
/usr/local/lib/openbabel/zindoformat.so did not load properly
t/example....FAILED tests 8-9
        Failed 2/11 tests, 81.82% okay
Failed Test Stat Wstat Total Fail  Failed  List of Failed
-------------------------------------------------------------------------------
t/example.t               11    2  18.18%  8-9
Failed 1/1 test scripts, 0.00% okay. 2/11 subtests failed, 81.82% okay.
make: *** [test_dynamic] Error 255



On Thu, 2005-12-01 at 10:58 -0500, Geoffrey Hutchison wrote:
> On Dec 1, 2005, at 10:01 AM, Noel O'Boyle wrote:
> 
> > Testing Perl...phew, doesn't work for Perl either. :-)
> > cp openbabel.pm blib/lib/Chemistry/openbabel.pm
> ...
> > t/example....Can't locate Chemistry/OpenBabel.pm in @INC (@INC
> 
> (smacks forehead) No, that's a different bug. Mac OS X has a case- 
> preserving, case-insensitive filesystem.
> 
> So Chemistry/openbabel.pm and Chemistry/OpenBabel.pm are the same  
> file on OS X. Not, of course on Linux.
> 
> For the Perl module, try "make clean; mv openbabel.pm OpenBabel.pm"  
> and repeat the original build.
> 
> Thanks,
> -Geoff