From: S J. S. <swa...@gm...> - 2005-11-29 16:08:01
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THis error is fixed by changing the name of openbabel.so to _openbabel.so. But we still get a problem. Here is the output when you run teh exmaple file after changing the name of openbabel.so Any ideas? Josh =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D > python examples.py Should print 0 (atoms) 0 Should print 2 (atoms) 2 Should print 1 (bond) 1 /home/dock/linux/lib/openbabel/APIInterface.so did not load properly /home/dock/linux/lib/openbabel/CSRformat.so did not load properly /home/dock/linux/lib/openbabel/PQSformat.so did not load properly /home/dock/linux/lib/openbabel/alchemyformat.so did not load properly /home/dock/linux/lib/openbabel/amberformat.so did not load properly /home/dock/linux/lib/openbabel/balstformat.so did not load properly /home/dock/linux/lib/openbabel/bgfformat.so did not load properly /home/dock/linux/lib/openbabel/boxformat.so did not load properly /home/dock/linux/lib/openbabel/cacaoformat.so did not load properly /home/dock/linux/lib/openbabel/cacheformat.so did not load properly /home/dock/linux/lib/openbabel/carformat.so did not load properly /home/dock/linux/lib/openbabel/cccformat.so did not load properly /home/dock/linux/lib/openbabel/chem3dformat.so did not load properly /home/dock/linux/lib/openbabel/chemdrawformat.so did not load properly /home/dock/linux/lib/openbabel/chemtoolformat.so did not load properly /home/dock/linux/lib/openbabel/copyformat.so did not load properly /home/dock/linux/lib/openbabel/crkformat.so did not load properly /home/dock/linux/lib/openbabel/cssrformat.so did not load properly /home/dock/linux/lib/openbabel/dmolformat.so did not load properly /home/dock/linux/lib/openbabel/fastsearchformat.so did not load properly /home/dock/linux/lib/openbabel/featformat.so did not load properly /home/dock/linux/lib/openbabel/fhformat.so did not load properly /home/dock/linux/lib/openbabel/fingerprintformat.so did not load properly /home/dock/linux/lib/openbabel/freefracformat.so did not load properly /home/dock/linux/lib/openbabel/gamessformat.so did not load properly /home/dock/linux/lib/openbabel/gaussformat.so did not load properly /home/dock/linux/lib/openbabel/ghemicalformat.so did not load properly /home/dock/linux/lib/openbabel/gromos96format.so did not load properly /home/dock/linux/lib/openbabel/hinformat.so did not load properly /home/dock/linux/lib/openbabel/inchiformat.so did not load properly /home/dock/linux/lib/openbabel/jaguarformat.so did not load properly /home/dock/linux/lib/openbabel/mdlformat.so did not load properly /home/dock/linux/lib/openbabel/mmodformat.so did not load properly /home/dock/linux/lib/openbabel/mpdformat.so did not load properly /home/dock/linux/lib/openbabel/mol2format.so did not load properly /home/dock/linux/lib/openbabel/mopacformat.so did not load properly /home/dock/linux/lib/openbabel/mpqcformat.so did not load properly /home/dock/linux/lib/openbabel/nwchemformat.so did not load properly /home/dock/linux/lib/openbabel/pcmodelformat.so did not load properly /home/dock/linux/lib/openbabel/pdbformat.so did not load properly /home/dock/linux/lib/openbabel/povrayformat.so did not load properly /home/dock/linux/lib/openbabel/qchemformat.so did not load properly /home/dock/linux/lib/openbabel/reportformat.so did not load properly /home/dock/linux/lib/openbabel/rxnformat.so did not load properly /home/dock/linux/lib/openbabel/shelxformat.so did not load properly /home/dock/linux/lib/openbabel/smilesformat.so did not load properly /home/dock/linux/lib/openbabel/tinkerformat.so did not load properly /home/dock/linux/lib/openbabel/turbomoleformat.so did not load properly /home/dock/linux/lib/openbabel/unichemformat.so did not load properly /home/dock/linux/lib/openbabel/viewmolformat.so did not load properly /home/dock/linux/lib/openbabel/xedformat.so did not load properly /home/dock/linux/lib/openbabel/xyzformat.so did not load properly /home/dock/linux/lib/openbabel/yasaraformat.so did not load properly /home/dock/linux/lib/openbabel/zindoformat.so did not load properly Should print 5 (atoms) 0 Should print 9 (atoms) after adding hydrogens =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D On 29/11/05, Noel O'Boyle <no...@ca...> wrote: > I'd just like to ditto the previous message. On Debian Sarge, after > compiling everything and installing the python extensions (from CVS), I > get the following message when trying to import openbabel: > > >>> import openbabel > Traceback (most recent call last): > File "<stdin>", line 1, in ? > File "openbabel.py", line 4, in ? > import _openbabel > ImportError: No module named _openbabel > > As Joshua points out, there is no _openbabel.so, only an openbabel.so. > > Regards, > Noel > > > > ------------------------------------------------------- > This SF.net email is sponsored by: Splunk Inc. Do you grep through log fi= les > for problems? Stop! Download the new AJAX search engine that makes > searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! > http://ads.osdn.com/?ad_id=3D7637&alloc_id=3D16865&op=3Dclick > _______________________________________________ > OpenBabel-scripting mailing list > Ope...@li... > https://lists.sourceforge.net/lists/listinfo/openbabel-scripting > |