(Discussed on openbabel-discuss mailing list, under same subject)
I'm using Open Babel 2.3.2 to canonicalize some SMILES strings.
I thought that each fragment of a disconnected SMILES would be canonicalized separately (which I believe agrees what what is explained in http://openbabel.org/dev-api/canonical_code_algorithm.shtml)
However, that is not the case in the below example, adding a fragment causes the first fragment to canonicalize differently:
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