ScreenCasts

Lists of screencasts for OpenMS

You can find already finished [ScreenCasts] on http://openms.de/documentation/

Highlights

TOPPView

• ??

TOPPAS

• ??

Howto sniplets

Name	Topics	Data	Comment	Status
navigating in TOPPView	loading, zooming, panning, reset zoom			done
1d view basics	intensity scaling, switch raw and peak mode			done
1d view advanced	measuring and statistics	peakpicker_tutorial	use picked for stats and raw for measuring
2d view basics	panning, zooming, 3d view			done
2d projections	panning, zooming, 3d view	LCMS_centroided	maybe some more details on the different elements?	done
2d view spectra box	stepping through 1d spectra	LCMS_centroided or RAW
view meta data	show how to access metadata	some instrument data
layers box	flipping, dragging layers to tabs	picked or MS2 data	show howto compare picked and raw / flip data and drag to new window
data filters box	applying filters	LCMS_centroided

Problem solving/visual workflows

• 1d peak picking (data available) (Zerck, data Zerck)
  • Baseline reduction and smoothing
  • Peak picking
• ID
  • ID in 1D spectra
  • ID mapping to features
• 2d quantification
  • unlabelled quanitfication (apply feature finder, show convex hulls) (Marc)
  • labelled quantification (SILAC, Lars; ..)